Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 4.4e-115 417.9 205 100.0
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 2.9e-82 308.9 195 76.9
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 7.4e-78 294.3 200 74.0
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 9.0e-76 287.3 199 71.4
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 1.5e-75 286.6 198 71.7
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 1.1e-68 263.8 196 63.8
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 2.6e-67 259.2 202 66.3
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 3.4e-67 258.8 208 61.1
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 1.3e-66 256.9 202 63.9
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 3.8e-66 255.4 200 61.5
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 4.9e-66 255.0 196 62.8
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 6.5e-66 254.6 232 54.3
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 6.5e-66 254.6 209 58.9
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 1.9e-65 253.1 196 61.7
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 4.2e-65 251.9 208 61.5
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 9.3e-65 250.8 206 63.1
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 2.1e-64 249.6 224 56.2
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 2.7e-64 249.2 207 62.8
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 2.7e-64 249.2 238 54.2
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 4.6e-64 248.4 199 61.3
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 6.0e-64 248.1 198 62.6
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 1.0e-63 247.3 200 61.0
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 1.0e-63 247.3 230 55.2
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 1.9e-62 243.0 224 57.1
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 4.3e-62 241.9 226 57.5
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 7.4e-62 241.1 201 57.7
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 9.6e-62 240.7 207 58.0
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 1.6e-61 240.0 228 55.3
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 2.1e-61 239.6 205 59.5
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 3.7e-61 238.8 222 55.4
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 4.8e-61 238.4 202 59.4
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 1.8e-60 236.5 211 56.4
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 3.1e-60 235.7 224 53.6
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 4.1e-60 235.3 206 58.7
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 1.2e-59 233.8 205 58.5
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 2.6e-59 232.6 225 52.9
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 3.4e-59 232.3 231 52.8
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 5.9e-59 231.5 200 57.5
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 7.6e-59 231.1 204 56.4
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 1.0e-58 230.7 204 58.3
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 2.2e-58 229.6 201 57.7
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 2.9e-58 229.2 202 57.4
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 3.8e-58 228.8 222 55.9
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 5.0e-58 228.4 221 57.0
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 5.0e-58 228.4 205 57.6
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 8.5e-58 227.6 199 56.3
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 8.5e-58 227.6 222 55.9
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 1.4e-57 226.9 208 55.8
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 2.5e-57 226.1 205 57.6
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 3.2e-57 225.7 199 55.8
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 3.2e-57 225.7 200 58.0
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 4.2e-57 225.3 217 54.8
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 4.2e-57 225.3 201 57.7
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 5.5e-57 224.9 196 58.2
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 5.5e-57 224.9 205 56.6
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 7.2e-57 224.6 216 55.6
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 7.2e-57 224.6 223 53.8
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 7.2e-57 224.6 223 53.8
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 7.2e-57 224.6 233 54.5
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 9.3e-57 224.2 218 56.0
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 1.2e-56 223.8 175 64.0
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 1.6e-56 223.4 216 55.6
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 1.6e-56 223.4 216 55.6
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 1.6e-56 223.4 215 54.9
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 2.7e-56 222.6 221 56.1
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 2.7e-56 222.6 197 55.8
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 4.6e-56 221.9 223 55.6
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 5.1e-55 218.4 220 54.5
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 5.1e-55 218.4 205 54.1
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 5.1e-55 218.4 207 56.0
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 6.7e-55 218.0 155 65.2
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 8.7e-55 217.6 204 53.4
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 1.1e-54 217.2 208 55.8
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 2.5e-54 216.1 231 51.5
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 3.3e-54 215.7 206 52.4
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 3.3e-54 215.7 204 54.4
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 9.7e-54 214.2 224 54.5
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 9.7e-54 214.2 191 56.0
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 2.8e-53 212.6 210 52.9
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 5.3e-52 208.4 199 52.8
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 5.3e-52 208.4 199 53.8
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 7.7e-51 204.5 191 50.3
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 1.7e-50 203.4 208 52.4
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 5.0e-50 201.8 140 68.6
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 6.5e-50 201.4 191 53.4
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 8.5e-50 201.1 194 51.5
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 1.9e-49 199.9 191 50.8
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 2.5e-49 199.5 197 49.7
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 6.7e-47 191.4 133 64.7
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 4.5e-43 178.7 212 48.1
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 7.2e-41 171.4 132 60.6
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 3.6e-40 169.1 113 69.9
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 1.0e-39 167.5 109 68.8
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 3.9e-39 165.6 114 69.3
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 4.5e-35 152.1 110 63.6
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 5.9e-35 151.8 119 58.8
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 1.7e-34 150.2 96 71.9
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 5.0e-34 148.7 228 39.5
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 6.5e-34 148.3 132 57.6
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 1.2e-30 137.5 146 46.6
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 2.0e-27 126.7 88 67.0
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 2.9e-26 122.9 132 43.9
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 6.8e-23 111.7 125 41.6
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 9.8e-22 107.8 68 72.1
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 9.8e-22 107.8 68 72.1
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 1.4e-20 104.0 76 61.8
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 9.1e-20 101.3 77 59.7
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 5.0e-18 95.5 180 32.2
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 8.6e-18 94.7 68 63.2
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 1.0e-15 87.8 126 39.7
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 9.8e-14 81.3 71 52.1
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 1.0e-10 71.2 115 38.3
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 3.8e-10 69.3 58 58.6
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 7.3e-09 65.1 44 63.6
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 8.0e-08 61.6 54 63.0
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 1.4e-07 60.8 54 61.1


User provided reference genes

Program Settings