Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 2.5e-101 372.1 183 100.0
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 3.1e-59 232.3 179 63.7
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 2.2e-57 226.1 176 62.5
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.5e-53 213.4 176 59.7
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.9e-53 213.0 176 59.7
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.9e-53 213.0 176 59.7
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.8e-52 209.1 202 52.5
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 4.0e-51 205.3 179 57.5
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.3e-49 200.3 179 54.7
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 9.2e-48 194.1 180 55.0
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.0e-46 190.7 156 58.3
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 3.0e-46 189.1 175 52.6
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 8.7e-46 187.6 175 53.7
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 7.3e-45 184.5 181 53.0
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 4.7e-44 181.8 175 53.1
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 6.2e-44 181.4 174 54.0
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 8.1e-44 181.0 178 55.1
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 4.0e-43 178.7 177 52.0
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 5.2e-43 178.3 124 67.7
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 6.9e-43 177.9 177 57.6
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 9.0e-43 177.6 180 50.6
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 9.0e-43 177.6 175 52.0
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 9.0e-43 177.6 175 53.1
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 9.0e-43 177.6 175 53.7
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 3.4e-42 175.6 180 49.4
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 7.6e-42 174.5 175 52.0
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 9.9e-42 174.1 175 52.0
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 9.9e-42 174.1 180 50.0
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 1.3e-41 173.7 179 50.8
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 1.7e-41 173.3 175 52.6
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 3.8e-41 172.2 175 52.0
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 6.4e-41 171.4 179 49.2
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 6.4e-41 171.4 179 49.7
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 6.4e-41 171.4 175 50.9
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 1.1e-40 170.6 179 49.2
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 1.1e-40 170.6 175 54.9
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.4e-40 170.2 175 50.9
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.4e-40 170.2 175 49.7
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.9e-40 169.9 179 48.6
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 2.4e-40 169.5 175 50.3
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 3.2e-40 169.1 175 49.7
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 3.2e-40 169.1 175 51.4
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.2e-40 168.7 175 50.9
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 4.2e-40 168.7 178 49.4
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.2e-40 168.7 175 52.0
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 5.4e-40 168.3 182 48.9
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 5.4e-40 168.3 175 51.4
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 9.3e-40 167.5 175 48.6
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.6e-39 166.8 175 50.3
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 1.6e-39 166.8 175 50.3
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.6e-39 166.8 175 49.1
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 2.1e-39 166.4 175 49.1
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 2.1e-39 166.4 175 49.7
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 2.1e-39 166.4 175 50.3
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 2.7e-39 166.0 179 46.4
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 2.7e-39 166.0 175 50.3
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 2.7e-39 166.0 175 50.3
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 3.5e-39 165.6 180 48.9
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 4.6e-39 165.2 179 48.6
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 4.6e-39 165.2 179 48.0
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 6.0e-39 164.9 175 48.6
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 1.0e-38 164.1 175 49.1
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 1.0e-38 164.1 180 48.3
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.0e-38 164.1 175 50.9
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 1.3e-38 163.7 180 47.8
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.3e-38 163.7 179 48.6
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 1.7e-38 163.3 175 49.1
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.7e-38 163.3 197 47.7
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.3e-38 162.9 175 48.6
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.3e-38 162.9 175 48.0
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 3.0e-38 162.5 175 49.1
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.0e-38 162.5 175 46.9
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.0e-38 162.5 175 49.7
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 3.0e-38 162.5 175 49.1
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 3.9e-38 162.2 175 48.6
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 3.9e-38 162.2 175 48.6
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 5.1e-38 161.8 169 55.0
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 5.1e-38 161.8 180 47.8
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 6.6e-38 161.4 175 49.1
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 6.6e-38 161.4 206 46.1
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 8.7e-38 161.0 175 48.6
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 8.7e-38 161.0 248 39.5
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.1e-37 160.6 178 47.2
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.1e-37 160.6 175 48.6
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 1.6e-36 156.8 178 46.1
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.1e-36 156.4 178 46.6
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 2.8e-36 156.0 180 46.1
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 2.8e-36 156.0 175 46.3
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 3.6e-36 155.6 175 46.3
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.1e-35 154.1 175 47.4
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 5.3e-35 151.8 178 44.9
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 5.3e-35 151.8 175 46.3
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.2e-34 150.6 175 48.6
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 4.5e-34 148.7 117 59.0
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 5.8e-34 148.3 178 46.1
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.7e-33 146.7 175 45.1
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.7e-33 146.7 139 53.2
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 2.2e-33 146.4 131 51.9
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 8.4e-33 144.4 177 48.0
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.4e-32 143.7 161 50.3
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 1.4e-32 143.7 151 50.3
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 1.9e-32 143.3 124 54.8
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 3.2e-32 142.5 177 47.5
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.2e-31 140.6 83 79.5
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 6.0e-31 138.3 157 51.0
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.8e-30 136.7 132 50.8
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 3.9e-30 135.6 85 72.9
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 5.1e-30 135.2 175 42.9
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 1.1e-29 134.0 196 40.8
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.1e-29 134.0 175 41.7
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 5.6e-29 131.7 184 41.3
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 4.0e-27 125.6 139 45.3
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.0e-26 123.2 175 41.1
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 4.5e-26 122.1 142 45.8
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.8e-26 121.7 139 46.8
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.2e-25 119.8 167 42.5
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.2e-25 119.8 124 49.2
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 9.3e-24 114.4 118 49.2
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 5.1e-22 108.6 218 33.0
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 1.1e-16 90.9 99 47.5
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.6e-10 69.7 89 40.4
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 7.2e-08 61.6 52 51.9
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.1e-06 55.5 36 75.0


User provided reference genes

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