Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 2.8e-191 671.8 340 100.0
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 3.4e-181 638.3 340 94.1
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 3.4e-181 638.3 336 94.9
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 6.5e-180 634.0 342 93.6
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 3.1e-174 615.1 340 90.6
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 4.1e-174 614.8 340 90.6
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 5.3e-174 614.4 340 90.6
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.5e-173 612.8 340 90.3
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 2.6e-173 612.1 340 89.7
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.7e-172 609.4 333 91.3
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 2.9e-172 608.6 340 89.7
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 2.9e-172 608.6 340 88.8
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.9e-172 608.6 338 89.3
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 6.5e-172 607.4 340 89.1
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.4e-171 606.3 340 88.8
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.4e-171 606.3 333 90.7
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 2.5e-171 605.5 342 88.6
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 3.2e-171 605.1 339 87.9
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 4.2e-171 604.7 340 89.7
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 5.5e-171 604.4 340 89.1
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 5.5e-171 604.4 340 88.8
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 9.4e-171 603.6 340 88.2
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 2.1e-170 602.4 334 90.1
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 2.7e-170 602.1 341 88.0
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.7e-170 602.1 341 88.6
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 3.6e-170 601.7 340 87.6
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 3.6e-170 601.7 336 88.4
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 4.7e-170 601.3 340 87.6
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 4.7e-170 601.3 340 88.2
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 4.7e-170 601.3 340 87.6
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.1e-170 600.9 340 87.6
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.0e-169 600.1 333 88.9
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.0e-169 600.1 341 89.1
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.4e-169 599.7 332 89.2
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.4e-169 599.7 333 90.1
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 1.8e-169 599.4 340 87.6
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.8e-169 599.4 340 87.6
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 2.3e-169 599.0 335 89.3
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 3.0e-169 598.6 335 89.0
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.9e-169 598.2 340 87.1
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.9e-169 598.2 341 88.3
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 3.9e-169 598.2 341 88.3
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 3.9e-169 598.2 341 88.3
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 5.2e-169 597.8 342 86.8
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 8.8e-169 597.0 341 88.0
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.1e-168 596.7 340 88.2
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 1.1e-168 596.7 340 87.1
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.5e-168 596.3 340 86.8
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 1.5e-168 596.3 337 89.0
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 5.7e-168 594.3 340 86.5
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 9.7e-168 593.6 340 86.5
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.3e-167 593.2 332 88.6
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 1.7e-167 592.8 334 87.7
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 2.8e-167 592.0 340 86.2
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 2.8e-167 592.0 332 88.6
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 3.7e-167 591.7 332 88.3
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 3.7e-167 591.7 340 86.5
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 4.8e-167 591.3 332 88.0
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 6.3e-167 590.9 332 88.0
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.1e-166 590.1 340 86.5
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.1e-166 590.1 340 86.5
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.1e-166 590.1 340 86.5
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 1.1e-166 590.1 340 86.5
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.4e-166 589.7 334 88.0
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.4e-166 589.7 334 88.0
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 2.4e-166 589.0 338 86.4
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 2.4e-166 589.0 332 87.3
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 4.1e-166 588.2 332 87.0
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.1e-166 588.2 334 87.7
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 7.0e-166 587.4 332 87.3
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 7.0e-166 587.4 332 87.0
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.2e-165 586.6 332 87.7
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.0e-165 585.9 326 89.9
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.9e-165 584.3 335 86.9
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 7.7e-165 583.9 330 87.0
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.0e-164 583.6 334 86.8
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 2.2e-164 582.4 336 85.1
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 2.9e-164 582.0 333 88.3
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 5.0e-164 581.3 332 85.5
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.5e-163 578.9 340 84.1
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 4.2e-163 578.2 340 83.5
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.2e-162 576.6 382 78.5
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.6e-162 576.2 333 85.0
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.6e-162 576.2 337 84.6
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 2.1e-162 575.9 348 82.2
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.7e-162 575.5 352 82.7
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 3.6e-162 575.1 338 84.3
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 3.6e-162 575.1 333 84.7
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 3.6e-162 575.1 333 85.0
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.6e-162 575.1 336 83.9
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 6.1e-162 574.3 337 84.3
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 8.0e-162 573.9 333 84.7
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 8.0e-162 573.9 333 84.4
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 8.0e-162 573.9 333 84.7
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.0e-161 573.5 333 84.4
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 1.4e-161 573.2 337 83.7
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.8e-161 572.8 337 83.7
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 3.0e-161 572.0 337 84.0
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 5.2e-161 571.2 337 83.7
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 5.2e-161 571.2 337 83.7
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 6.8e-161 570.9 337 83.7
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 8.8e-161 570.5 337 84.0
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 1.2e-160 570.1 309 90.6
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 2.6e-160 568.9 337 83.4
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 2.6e-160 568.9 309 90.6
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 3.4e-160 568.5 337 83.4
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 3.4e-160 568.5 326 84.7
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 7.5e-160 567.4 324 87.7
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 3.7e-159 565.1 348 81.0
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 3.1e-158 562.0 340 81.8
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 4.1e-158 561.6 343 81.6
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 2.0e-157 559.3 339 82.0
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 4.5e-157 558.1 340 84.1
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.9e-156 555.4 315 87.6
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 3.8e-156 555.1 336 78.6
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 1.1e-155 553.5 321 86.3
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.2e-155 552.0 341 83.0
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 4.7e-154 548.1 314 85.0
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.2e-152 543.5 339 77.6
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.8e-151 538.9 339 77.3
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 3.7e-151 538.5 314 84.1
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 3.1e-150 535.4 340 80.9
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.4e-150 534.6 336 76.5
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.6e-149 533.1 336 76.5
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.7e-148 529.6 375 74.7
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.8e-145 519.6 417 67.6
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 9.8e-144 513.8 363 73.6
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.6e-138 496.5 271 90.8
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 8.9e-137 490.7 340 76.5
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.3e-135 486.9 288 83.0
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 6.4e-135 484.6 320 72.8
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.2e-133 480.3 265 90.6
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.2e-133 480.3 265 90.6
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.3e-132 476.1 262 89.3
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 1.4e-126 456.8 340 71.2
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 7.1e-126 454.5 336 71.1
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 3.7e-119 432.2 238 88.7
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 8.3e-119 431.0 341 65.1
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 2.1e-117 426.4 251 82.5
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 4.6e-117 425.2 251 85.3
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 3.1e-113 412.5 324 60.8
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 9.6e-107 391.0 249 75.9
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 2.1e-106 389.8 216 88.4
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 7.1e-102 374.8 327 59.0
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 2.7e-101 372.9 325 55.4
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 2.5e-54 216.9 132 82.6
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.8e-43 178.3 159 60.4
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 4.9e-34 149.4 180 53.9
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 4.0e-28 129.8 79 78.5
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 5.7e-27 125.9 74 83.8
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 1.3e-26 124.8 79 74.7
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 3.7e-26 123.2 72 81.9
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.6e-19 100.5 107 54.2
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.7e-16 90.5 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 4.7e-13 79.7 101 49.5
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.0e-11 74.3 41 80.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 2.6e-11 73.9 57 68.4
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.1e-09 68.6 100 42.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.9e-09 67.8 59 61.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.9e-09 67.8 59 61.0


User provided reference genes

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