Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 6.5e-72 273.9 130 100.0
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.2e-71 271.6 130 98.5
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 5.0e-64 247.7 123 95.1
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 2.7e-57 225.3 130 79.2
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 7.7e-57 223.8 128 80.5
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 1.3e-56 223.0 128 77.3
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 5.0e-56 221.1 130 76.9
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 1.1e-55 219.9 127 78.0
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 7.2e-55 217.2 130 73.8
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 1.2e-54 216.5 128 76.6
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 1.2e-54 216.5 128 76.6
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.6e-54 216.1 128 79.7
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 4.7e-54 214.5 126 76.2
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 4.7e-54 214.5 126 74.6
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 4.7e-54 214.5 124 75.8
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 8.0e-54 213.8 129 74.4
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 8.0e-54 213.8 128 78.9
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 1.0e-53 213.4 128 75.8
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.4e-53 213.0 126 74.6
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 1.4e-53 213.0 128 73.4
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 1.4e-53 213.0 126 72.2
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 1.4e-53 213.0 130 73.8
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 2.3e-53 212.2 124 75.8
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 2.3e-53 212.2 124 75.0
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 2.3e-53 212.2 124 79.8
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 2.3e-53 212.2 124 77.4
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 3.0e-53 211.8 126 75.4
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 5.2e-53 211.1 124 74.2
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 5.2e-53 211.1 130 73.8
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 8.9e-53 210.3 127 74.8
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 2.6e-52 208.8 126 73.0
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 3.4e-52 208.4 147 66.0
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 3.4e-52 208.4 124 74.2
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 3.4e-52 208.4 124 76.6
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 4.4e-52 208.0 126 72.2
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 4.4e-52 208.0 126 73.8
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 5.7e-52 207.6 125 72.8
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 5.7e-52 207.6 125 72.8
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 5.7e-52 207.6 126 72.2
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 7.5e-52 207.2 126 74.6
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 7.5e-52 207.2 128 71.9
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 7.5e-52 207.2 129 72.1
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 7.5e-52 207.2 124 75.0
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 7.5e-52 207.2 124 74.2
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 7.5e-52 207.2 126 72.2
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 7.5e-52 207.2 128 76.6
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.7e-51 206.1 125 72.0
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 1.7e-51 206.1 130 71.5
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 1.7e-51 206.1 124 73.4
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 1.7e-51 206.1 126 72.2
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 1.7e-51 206.1 124 73.4
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 1.7e-51 206.1 124 73.4
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 1.7e-51 206.1 124 73.4
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 2.2e-51 205.7 126 71.4
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.2e-51 205.7 124 75.0
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 2.2e-51 205.7 126 73.0
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 2.8e-51 205.3 124 72.6
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 3.7e-51 204.9 124 73.4
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 4.9e-51 204.5 128 71.9
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 1.1e-50 203.4 124 74.2
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 1.4e-50 203.0 126 70.6
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 1.8e-50 202.6 127 74.8
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 3.1e-50 201.8 124 72.6
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.1e-50 201.4 123 73.2
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 4.1e-50 201.4 124 73.4
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 9.2e-50 200.3 124 73.4
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.2e-49 199.9 123 71.5
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.0e-49 199.1 123 71.5
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.5e-49 198.4 123 70.7
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 4.5e-49 198.0 123 70.7
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 5.9e-49 197.6 124 71.8
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 1.0e-48 196.8 122 71.3
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 1.0e-48 196.8 122 71.3
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 2.9e-48 195.3 123 73.2
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 3.9e-48 194.9 124 71.0
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 3.9e-48 194.9 124 69.4
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 5.0e-48 194.5 118 75.4
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.9e-47 192.6 137 65.7
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 9.5e-47 190.3 126 65.1
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 2.8e-46 188.7 124 68.5
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 8.0e-46 187.2 124 67.7
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 1.4e-45 186.4 124 67.7
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 3.1e-45 185.3 124 67.7
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 5.2e-45 184.5 124 66.9
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 6.8e-45 184.1 124 67.7
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 8.9e-45 183.7 124 66.1
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 1.2e-44 183.3 121 67.8
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 1.5e-44 183.0 124 66.9
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 1.5e-44 183.0 107 79.4
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 2.6e-44 182.2 118 69.5
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 3.4e-44 181.8 124 66.1
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 5.4e-42 174.5 116 67.2
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 1.6e-41 172.9 123 65.9
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 1.6e-41 172.9 123 65.9
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 1.3e-40 169.9 123 64.2
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 5.6e-39 164.5 104 72.1
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 7.3e-39 164.1 127 59.8
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.8e-37 159.5 126 55.6
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 3.7e-35 151.8 126 56.3
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 4.1e-34 148.3 145 50.3
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.0e-33 144.4 128 52.3
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 1.1e-31 140.2 78 82.1
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 6.2e-30 134.4 114 56.1
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 8.3e-27 124.0 82 69.5
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.4e-26 123.2 77 72.7
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 1.9e-26 122.9 88 67.0
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.4e-26 121.3 122 54.9
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 9.2e-26 120.6 79 68.4
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-25 120.2 79 72.2
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-25 120.2 78 71.8
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.1e-25 119.4 79 70.9
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.1e-25 119.4 79 70.9
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.5e-25 118.6 78 71.8
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.5e-25 118.6 78 71.8
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 7.8e-25 117.5 76 73.7
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 1.3e-24 116.7 151 37.7
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 1.3e-16 90.1 56 71.4
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 1.3e-16 90.1 50 78.0
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.7e-16 89.7 61 63.9
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 1.7e-16 89.7 50 80.0
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 3.0e-16 89.0 50 76.0
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.7e-16 87.4 50 70.0
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.5e-15 86.7 79 54.4
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 4.3e-15 85.1 52 69.2
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 5.6e-15 84.7 49 73.5
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 1.3e-14 83.6 52 67.3
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 4.8e-14 81.6 50 70.0
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 6.2e-14 81.3 52 65.4
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 2.4e-13 79.3 60 58.3
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 5.3e-13 78.2 50 60.0
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 5.3e-13 78.2 51 60.8
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.0e-12 76.3 47 68.1
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 9.9e-12 73.9 50 62.0
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 2.1e-09 66.2 38 71.1
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 7.3e-07 57.8 111 31.5
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 7.3e-07 57.8 34 64.7
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 9.6e-07 57.4 63 41.3
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 6.2e-06 54.7 35 62.9
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 6.2e-06 54.7 100 32.0
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 8.1e-06 54.3 113 28.3
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 8.1e-06 54.3 111 27.0


User provided reference genes

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