Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 9.2e-170 600.1 302 100.0
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 1.1e-101 374.0 211 88.6
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 4.9e-78 295.4 346 52.0
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 5.0e-67 258.8 302 52.0
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 1.3e-62 244.2 313 49.5
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 9.2e-53 211.5 291 50.5
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 1.1e-50 204.5 310 46.5
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 1.9e-50 203.8 297 47.1
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 1.9e-50 203.8 297 47.1
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 3.4e-47 193.0 292 45.9
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 3.8e-46 189.5 314 42.7
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 4.9e-46 189.1 291 46.7
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 6.4e-46 188.7 295 46.8
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 8.4e-46 188.3 290 46.9
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 2.4e-45 186.8 292 49.0
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 2.4e-45 186.8 306 41.2
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 3.2e-45 186.4 294 46.3
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 3.2e-45 186.4 298 46.3
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 5.4e-45 185.7 306 43.5
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 5.4e-45 185.7 294 47.3
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 7.1e-45 185.3 298 46.3
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 6.0e-44 182.2 290 46.9
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 7.8e-44 181.8 306 42.5
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 1.3e-43 181.0 298 45.3
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 3.0e-43 179.9 298 43.6
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 1.1e-42 177.9 299 46.2
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 1.5e-42 177.6 305 42.6
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 1.5e-42 177.6 294 45.6
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.9e-42 177.2 289 45.7
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.9e-42 177.2 289 45.7
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 3.3e-42 176.4 300 43.7
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 3.3e-42 176.4 295 45.4
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 1.3e-41 174.5 295 43.7
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 1.3e-41 174.5 297 43.1
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 1.3e-41 174.5 307 45.0
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.6e-41 174.1 301 43.2
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 3.6e-41 172.9 299 44.1
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.1e-40 171.4 296 46.3
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 1.8e-40 170.6 301 44.9
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 1.8e-40 170.6 303 42.9
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 2.4e-40 170.2 309 41.7
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 4.0e-40 169.5 294 44.6
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 6.9e-40 168.7 295 44.4
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 1.2e-39 167.9 292 41.8
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 9.9e-39 164.9 305 39.3
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 1.3e-38 164.5 309 40.1
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 1.3e-38 164.5 290 41.0
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 2.2e-38 163.7 302 40.4
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 2.9e-38 163.3 290 44.5
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 3.8e-38 162.9 296 45.6
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 1.9e-37 160.6 309 41.1
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 1.9e-37 160.6 296 43.2
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 4.6e-36 156.0 290 39.7
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.3e-35 154.5 295 44.1
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 1.3e-35 154.5 297 40.7
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 3.9e-35 152.9 289 42.6
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 8.7e-35 151.8 304 39.8
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 3.3e-34 149.8 289 39.4
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 1.6e-33 147.5 303 39.3
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 6.2e-33 145.6 304 38.5
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 1.1e-32 144.8 288 40.6
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 5.3e-32 142.5 358 36.9
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 2.6e-31 140.2 302 38.4
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 4.5e-31 139.4 354 36.7
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 8.4e-30 135.2 372 34.7
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 4.2e-29 132.9 297 38.7
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 1.6e-28 131.0 205 42.4
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 2.5e-26 123.6 288 36.8
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 2.5e-26 123.6 294 36.4
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 1.3e-25 121.3 288 36.5
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 8.1e-25 118.6 251 37.5
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 1.1e-24 118.2 182 48.4
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 1.8e-24 117.5 318 34.6
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 5.3e-24 115.9 288 36.1
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 2.0e-23 114.0 228 36.8
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 2.6e-23 113.6 235 39.1
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 5.8e-23 112.5 304 34.2
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 7.6e-23 112.1 305 34.4
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 7.6e-23 112.1 302 34.1
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 1.0e-22 111.7 265 36.6
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 1.3e-22 111.3 314 33.4
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 2.2e-22 110.5 188 40.4
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 4.2e-21 106.3 291 37.5
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 5.5e-21 105.9 297 37.0
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 7.1e-21 105.5 270 33.3
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 1.2e-20 104.8 247 35.2
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 7.9e-20 102.1 157 47.1
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 7.9e-20 102.1 209 40.7
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 1.8e-19 100.9 215 36.7
Os03g0203000 Oryza sativa ssp. japonica HOM05D006273 ORTHO05D007607 5.1e-19 99.4 311 32.5
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 6.7e-19 99.0 305 34.1
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 8.7e-19 98.6 292 33.6
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 1.1e-18 98.2 294 33.3
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 1.5e-18 97.8 203 38.4
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 9.6e-18 95.1 294 34.4
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 1.3e-17 94.7 286 35.3
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 1.6e-17 94.4 241 38.2
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 6.3e-17 92.4 287 33.1
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 2.4e-16 90.5 307 35.2
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 3.1e-16 90.1 306 34.3
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 4.1e-16 89.7 329 33.1
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 4.1e-16 89.7 262 34.0
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 5.3e-16 89.4 291 34.7
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 6.9e-16 89.0 305 33.1
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 5.9e-15 85.9 297 35.0
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 7.6e-15 85.5 291 34.4
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 7.6e-15 85.5 252 35.3
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 1.0e-14 85.1 288 35.1
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 2.9e-14 83.6 304 31.9
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 1.4e-13 81.3 290 33.1
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 1.2e-12 78.2 290 30.3
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 1.0e-11 75.1 291 33.0
SEGI_25142 Sequoiadendron giganteum HOM05D006273 ORTHO05D007607 6.3e-09 65.9 262 32.1
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 2.4e-08 63.9 296 31.1
Atru.chr5.2357 Acer truncatum HOM05D006273 ORTHO05D007607 4.1e-08 63.2 206 33.5
AL3G33090 Arabidopsis lyrata HOM05D006273 ORTHO05D007607 2.6e-07 60.5 289 30.4
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 7.7e-07 58.9 266 30.8


User provided reference genes

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