Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 1.4e-66 256.1 126 100.0
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.0e-25 119.4 111 56.8
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.4e-25 118.6 111 56.8
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 1.6e-22 109.8 111 53.2
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.3e-21 106.7 108 51.9
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.9e-21 105.1 97 54.6
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 8.7e-21 104.0 107 54.2
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.6e-19 99.8 107 51.4
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.8e-19 98.2 107 50.5
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.4e-15 86.7 107 43.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 2.4e-15 85.9 107 43.9
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.2e-14 83.6 107 43.0
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.2e-14 83.6 108 49.1
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.6e-14 83.2 107 43.0
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.0e-14 81.3 107 40.2
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.0e-14 81.3 107 40.2
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 6.0e-14 81.3 107 44.9
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 1.0e-13 80.5 107 41.1
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.7e-13 79.7 103 42.7
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 2.3e-13 79.3 107 43.0
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 3.0e-13 79.0 108 43.5
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.9e-13 78.6 107 42.1
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 8.7e-13 77.4 109 41.3
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.9e-12 76.3 111 36.9
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.5e-12 75.9 108 40.7
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.3e-12 75.5 107 38.3
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.3e-12 75.5 108 42.6
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.3e-12 75.5 92 44.6
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 3.3e-12 75.5 107 41.1
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 4.3e-12 75.1 107 42.1
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.3e-12 75.1 101 43.6
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 5.6e-12 74.7 108 39.8
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 7.4e-12 74.3 107 38.3
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 9.6e-12 73.9 98 43.9
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.3e-11 73.6 110 38.2
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.3e-11 73.6 108 38.9
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.3e-11 73.6 108 39.8
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.6e-11 73.2 107 38.3
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.1e-11 72.8 109 39.4
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.1e-11 72.8 107 39.3
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.1e-11 72.8 108 39.8
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 3.6e-11 72.0 117 35.9
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 3.6e-11 72.0 111 34.2
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 6.2e-11 71.2 92 47.8
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 8.1e-11 70.9 92 43.5
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 8.1e-11 70.9 109 39.4
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 1.1e-10 70.5 109 36.7
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.4e-10 70.1 108 38.0
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.4e-10 70.1 108 38.0
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.8e-10 69.7 107 37.4
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.8e-10 69.7 107 37.4
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.4e-10 69.3 105 35.2
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 2.4e-10 69.3 107 37.4
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.1e-10 68.9 110 40.0
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.1e-10 68.9 110 40.0
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 3.1e-10 68.9 107 34.6
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.1e-10 68.9 107 37.4
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 3.1e-10 68.9 102 39.2
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 6.9e-10 67.8 113 37.2
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.2e-09 67.0 107 35.5
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.2e-09 67.0 92 41.3
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 2.0e-09 66.2 103 37.9
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.6e-09 65.9 107 34.6
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.6e-09 65.9 110 34.5
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 4.5e-09 65.1 107 35.5
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.5e-09 65.1 107 33.6
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.8e-09 64.7 107 33.6
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 5.8e-09 64.7 93 45.2
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 5.8e-09 64.7 114 39.5
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 5.8e-09 64.7 114 39.5
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 7.6e-09 64.3 107 38.3
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 7.6e-09 64.3 105 35.2
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.3e-08 63.5 109 39.4
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.3e-08 63.5 93 40.9
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.3e-08 63.5 118 38.1
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.7e-08 63.2 108 36.1
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.2e-08 62.8 107 36.4
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 2.9e-08 62.4 114 33.3
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.9e-08 62.4 109 35.8
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.9e-08 62.4 109 35.8
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.9e-08 62.4 109 35.8
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 2.9e-08 62.4 118 35.6
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.9e-08 62.4 104 35.6
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.8e-08 62.0 108 37.0
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 4.9e-08 61.6 107 32.7
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 6.4e-08 61.2 109 36.7
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 8.4e-08 60.8 91 37.4
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 8.4e-08 60.8 91 37.4
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.9e-07 59.7 106 32.1
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 1.9e-07 59.7 92 35.9
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.4e-07 59.3 92 35.9
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.2e-07 58.9 107 35.5
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.2e-07 58.9 93 37.6
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 3.2e-07 58.9 104 38.5
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 4.2e-07 58.5 105 31.4
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 4.2e-07 58.5 105 31.4
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 4.2e-07 58.5 96 36.5
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 5.5e-07 58.2 106 29.2
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 5.5e-07 58.2 92 40.2
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 9.3e-07 57.4 107 31.8
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 9.3e-07 57.4 105 30.5
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 9.3e-07 57.4 58 50.0
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.2e-06 57.0 95 37.9
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.2e-06 57.0 105 30.5
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.6e-06 56.6 105 30.5
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.6e-06 56.6 87 35.6
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 2.1e-06 56.2 107 31.8
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.7e-06 55.8 107 30.8
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 3.5e-06 55.5 90 33.3
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 6.0e-06 54.7 104 33.7
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 6.0e-06 54.7 96 34.4
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 7.9e-06 54.3 53 49.1
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 7.9e-06 54.3 96 39.6
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 7.9e-06 54.3 113 30.1
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 7.9e-06 54.3 90 36.7


User provided reference genes

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