Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.0e-93 345.1 172 100.0
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.4e-52 208.8 125 81.6
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.8e-48 196.4 124 75.8
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.8e-48 196.4 125 76.0
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 2.3e-48 196.1 125 76.0
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.9e-47 193.0 125 74.4
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 7.4e-47 191.0 130 71.5
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 2.0e-44 183.0 138 64.5
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.0e-44 183.0 130 68.5
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 3.4e-44 182.2 132 67.4
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 4.5e-44 181.8 130 66.2
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 5.8e-44 181.4 125 69.6
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 5.8e-44 181.4 130 66.9
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 5.8e-44 181.4 130 66.9
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 5.8e-44 181.4 130 70.0
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.3e-43 180.3 130 70.0
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.7e-43 179.9 125 71.2
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 1.7e-43 179.9 130 69.2
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 3.8e-43 178.7 130 64.6
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.8e-43 178.7 130 64.6
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 3.8e-43 178.7 130 64.6
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.8e-43 178.7 130 66.9
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 4.9e-43 178.3 130 65.4
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 8.4e-43 177.6 130 63.8
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.1e-42 177.2 130 65.4
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.9e-42 176.4 130 64.6
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.9e-42 176.4 130 64.6
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 2.4e-42 176.0 125 70.4
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 3.2e-42 175.6 138 63.8
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 3.2e-42 175.6 161 55.3
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 3.2e-42 175.6 130 67.7
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 4.2e-42 175.3 129 65.9
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 4.2e-42 175.3 130 63.8
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.5e-42 174.9 130 64.6
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.5e-42 174.9 130 64.6
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 5.5e-42 174.9 130 64.6
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 5.5e-42 174.9 125 70.4
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 7.1e-42 174.5 130 64.6
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 7.1e-42 174.5 130 66.9
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 7.1e-42 174.5 138 63.8
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 9.3e-42 174.1 138 64.5
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 9.3e-42 174.1 125 66.4
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.6e-41 173.3 130 66.9
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 2.1e-41 172.9 130 64.6
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 2.1e-41 172.9 125 67.2
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.5e-41 172.2 130 67.7
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 3.5e-41 172.2 139 63.3
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 6.0e-41 171.4 130 63.8
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 6.0e-41 171.4 135 63.7
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 6.0e-41 171.4 130 66.2
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 6.0e-41 171.4 130 67.7
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 6.0e-41 171.4 125 68.8
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 7.9e-41 171.0 129 65.9
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 7.9e-41 171.0 130 65.4
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 7.9e-41 171.0 130 64.6
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 7.9e-41 171.0 130 64.6
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 7.9e-41 171.0 131 65.6
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.3e-40 170.2 130 65.4
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.8e-40 169.9 132 63.6
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 2.3e-40 169.5 180 51.7
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 3.0e-40 169.1 129 64.3
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 3.0e-40 169.1 131 64.1
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 5.1e-40 168.3 130 63.1
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 8.7e-40 167.5 130 63.1
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 8.7e-40 167.5 130 63.8
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.5e-39 166.8 130 62.3
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 2.5e-39 166.0 125 65.6
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 2.5e-39 166.0 141 60.3
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 2.5e-39 166.0 130 62.3
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 3.3e-39 165.6 125 66.4
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.3e-39 165.2 131 62.6
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.6e-39 164.9 131 61.8
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 5.6e-39 164.9 134 62.7
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 7.4e-39 164.5 130 64.6
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.3e-38 163.7 139 63.3
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.3e-38 163.7 139 63.3
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.3e-38 163.7 130 62.3
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 2.1e-38 162.9 131 63.4
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.8e-38 162.5 125 60.8
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 2.8e-38 162.5 131 63.4
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 6.2e-38 161.4 137 62.0
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 8.2e-38 161.0 139 61.2
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 1.1e-37 160.6 131 63.4
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.4e-37 160.2 147 59.9
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.4e-37 160.2 126 64.3
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 3.1e-37 159.1 128 60.9
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 3.1e-37 159.1 131 61.1
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 4.0e-37 158.7 130 59.2
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.0e-37 158.7 144 59.7
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 5.3e-37 158.3 138 59.4
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 5.3e-37 158.3 131 61.1
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-36 157.1 128 61.7
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 2.0e-36 156.4 128 60.9
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 2.0e-36 156.4 128 60.2
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 5.8e-36 154.8 128 60.2
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 7.6e-36 154.5 130 58.5
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 7.6e-36 154.5 130 61.5
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.3e-35 153.7 106 69.8
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.3e-35 153.7 98 76.5
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 2.2e-35 152.9 130 61.5
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.9e-35 152.5 126 58.7
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.8e-35 152.1 133 62.4
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 4.2e-34 148.7 124 61.3
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 9.3e-34 147.5 125 59.2
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 2.1e-33 146.4 105 65.7
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 3.5e-33 145.6 130 57.7
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.3e-32 142.9 125 59.2
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 5.1e-32 141.7 136 51.5
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 8.7e-32 141.0 130 56.9
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 1.9e-31 139.8 140 50.7
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.7e-31 137.5 102 67.6
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.5e-28 130.2 144 46.5
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.0e-27 125.2 125 56.0
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.0e-27 125.2 125 56.0
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 8.5e-27 124.4 125 51.2
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 7.2e-26 121.3 125 49.6
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.6e-25 120.2 103 63.1
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.6e-25 120.2 125 48.8
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 2.1e-25 119.8 126 51.6
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.1e-25 119.8 126 53.2
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 4.6e-25 118.6 75 72.0
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.0e-24 117.5 75 73.3
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 3.9e-24 115.5 101 56.4
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 9.7e-23 110.9 89 58.4
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 4.8e-22 108.6 78 62.8
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 6.3e-22 108.2 126 46.8
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 6.3e-22 108.2 83 67.5
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-21 107.1 121 47.1
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.5e-19 97.8 129 42.6
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 6.1e-17 91.7 62 66.1
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 7.9e-17 91.3 133 42.9
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.7e-14 83.6 83 51.8
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 9.1e-13 77.8 123 40.7
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 4.5e-12 75.5 77 50.6
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 2.2e-11 73.2 60 60.0
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 8.0e-09 64.7 55 61.8
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 7.4e-07 58.2 131 27.5
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 9.7e-07 57.8 49 57.1


User provided reference genes

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