Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 1.1e-41 173.3 114 100.0
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 8.4e-31 137.1 117 71.8
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 1.3e-28 129.8 115 72.2
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 3.0e-28 128.6 117 70.1
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.1e-26 122.5 94 77.7
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.1e-26 122.5 94 77.7
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 1.2e-24 116.7 116 66.4
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 3.4e-24 115.2 94 74.5
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 1.3e-23 113.2 94 73.4
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 1.3e-23 113.2 94 69.1
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 2.2e-23 112.5 110 64.5
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 2.2e-23 112.5 94 70.2
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 2.9e-23 112.1 97 70.1
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 2.9e-23 112.1 113 60.2
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 2.9e-23 112.1 94 71.3
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 3.8e-23 111.7 119 63.9
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 1.1e-22 110.2 113 61.9
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 3.2e-22 108.6 121 60.3
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 4.2e-22 108.2 121 62.8
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 4.2e-22 108.2 122 60.7
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 5.4e-22 107.8 122 60.7
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 7.1e-22 107.5 123 62.6
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 1.6e-21 106.3 120 55.8
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 2.7e-21 105.5 116 65.5
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 3.5e-21 105.1 122 60.7
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 4.6e-21 104.8 107 60.7
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 4.6e-21 104.8 122 60.7
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 4.6e-21 104.8 98 66.3
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 6.0e-21 104.4 123 58.5
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 1.3e-20 103.2 98 64.3
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 1.7e-20 102.8 125 55.2
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 3.0e-20 102.1 99 64.6
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 8.7e-20 100.5 121 55.4
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 8.7e-20 100.5 94 63.8
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 1.1e-19 100.1 95 63.2
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 1.5e-19 99.8 114 59.6
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 2.5e-19 99.0 114 58.8
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 3.3e-19 98.6 94 64.9
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 4.3e-19 98.2 114 54.4
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 5.6e-19 97.8 118 62.7
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 7.3e-19 97.4 127 54.3
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 9.6e-19 97.1 98 65.3
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 2.1e-18 95.9 102 60.8
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 2.1e-18 95.9 103 62.1
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 4.8e-18 94.7 99 64.6
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 4.8e-18 94.7 118 59.3
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 6.2e-18 94.4 100 60.0
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 6.2e-18 94.4 101 63.4
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 1.1e-17 93.6 116 55.2
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 1.8e-17 92.8 119 63.9
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 2.4e-17 92.4 126 53.2
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 3.1e-17 92.0 124 50.8
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 3.1e-17 92.0 118 59.3
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 4.0e-17 91.7 118 57.6
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 5.3e-17 91.3 116 56.9
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 5.3e-17 91.3 120 51.7
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 5.3e-17 91.3 118 58.5
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 1.2e-16 90.1 106 59.4
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 1.2e-16 90.1 99 62.6
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 2.0e-16 89.4 118 57.6
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 2.6e-16 89.0 116 54.3
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 4.5e-16 88.2 100 59.0
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 5.8e-16 87.8 116 53.4
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 1.3e-15 86.7 116 52.6
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 2.9e-15 85.5 100 62.0
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 3.8e-15 85.1 103 58.3
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 3.8e-15 85.1 103 58.3
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 3.8e-15 85.1 122 51.6
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.4e-14 83.2 119 50.4
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.4e-14 83.2 119 50.4
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.4e-14 82.4 119 50.4
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 2.4e-14 82.4 103 57.3
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 3.2e-14 82.0 127 49.6
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 7.1e-14 80.9 119 49.6
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 7.1e-14 80.9 119 49.6
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 9.3e-14 80.5 125 48.0
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 1.6e-13 79.7 96 58.3
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 1.6e-13 79.7 96 58.3
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 2.1e-13 79.3 70 70.0
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 2.3e-12 75.9 95 55.8
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 3.0e-12 75.5 94 58.5
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 8.7e-12 73.9 70 64.3
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 1.5e-11 73.2 77 62.3
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 1.9e-11 72.8 130 50.0
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 4.8e-10 68.2 93 50.5
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 1.4e-09 66.6 53 69.8
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 1.4e-09 66.6 52 71.2
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 5.3e-09 64.7 129 41.1
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 6.9e-09 64.3 58 65.5
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 3.4e-08 62.0 105 53.3
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 3.4e-08 62.0 98 55.1
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 3.4e-08 62.0 98 55.1
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 7.6e-08 60.8 107 51.4
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 9.9e-08 60.5 66 62.1
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 1.7e-07 59.7 104 51.9
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 2.2e-07 59.3 104 51.9
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 2.9e-07 58.9 105 51.4
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 3.8e-07 58.5 106 50.9
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 4.9e-07 58.2 102 52.9
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 4.9e-07 58.2 102 52.9
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 6.4e-07 57.8 105 50.5
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 6.4e-07 57.8 105 50.5
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 8.4e-07 57.4 106 50.9
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 8.4e-07 57.4 106 50.9
Mapoly0051s0054 Marchantia polymorpha HOM05D006797 ORTHO05D007696 8.4e-07 57.4 109 39.4
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 1.4e-06 56.6 105 51.4
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 1.4e-06 56.6 105 51.4
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 1.4e-06 56.6 105 49.5
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 1.9e-06 56.2 100 52.0
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 2.4e-06 55.8 104 50.0
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 2.4e-06 55.8 80 51.2
Pp3c24_14860 Physcomitrium patens HOM05D006797 ORTHO05D007696 2.4e-06 55.8 104 43.3
SMO167G0044 Selaginella moellendorffii HOM05D006797 ORTHO05D007696 4.2e-06 55.1 108 40.7


User provided reference genes

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