Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 2.0e-72 275.8 154 100.0
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 1.9e-41 172.9 138 73.2
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.4e-41 172.6 140 71.4
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 6.0e-40 167.9 149 69.1
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 2.1e-37 159.5 149 69.8
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 1.2e-32 143.7 159 61.0
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 2.3e-31 139.4 150 60.7
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 3.0e-31 139.0 145 66.9
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 6.6e-31 137.9 151 61.6
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 1.9e-30 136.3 152 58.6
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 3.3e-30 135.6 154 58.4
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 4.3e-30 135.2 153 61.4
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 5.6e-30 134.8 153 62.1
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 5.6e-30 134.8 156 59.0
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 7.3e-30 134.4 156 56.4
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.2e-29 133.7 138 63.0
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 2.8e-29 132.5 153 61.4
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 3.6e-29 132.1 159 60.4
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 4.7e-29 131.7 132 63.6
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 4.7e-29 131.7 132 63.6
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 8.1e-29 131.0 141 60.3
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 1.1e-28 130.6 141 60.3
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.1e-28 130.6 133 63.9
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.1e-28 130.6 133 63.9
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.4e-28 130.2 156 58.3
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.4e-28 130.2 152 58.6
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 1.8e-28 129.8 155 60.6
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.4e-28 129.4 153 60.1
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.4e-28 129.4 152 57.9
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 3.1e-28 129.0 142 59.2
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 4.0e-28 128.6 155 58.1
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 5.2e-28 128.3 153 59.5
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 5.2e-28 128.3 153 59.5
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 6.8e-28 127.9 152 60.5
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 8.9e-28 127.5 134 64.9
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 1.2e-27 127.1 141 58.9
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 1.5e-27 126.7 139 60.4
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 2.0e-27 126.3 153 56.2
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.0e-27 126.3 139 61.2
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 2.0e-27 126.3 153 56.2
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 2.0e-27 126.3 130 63.1
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 3.4e-27 125.6 131 61.8
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 3.4e-27 125.6 142 57.7
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 3.4e-27 125.6 139 60.4
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 4.4e-27 125.2 154 55.2
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 4.4e-27 125.2 142 58.5
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 5.8e-27 124.8 150 58.0
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.3e-26 123.6 153 56.9
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.3e-26 123.6 150 57.3
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 1.7e-26 123.2 146 58.2
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 1.7e-26 123.2 132 62.1
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.7e-26 123.2 153 58.2
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.7e-26 123.2 153 54.9
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 2.9e-26 122.5 151 60.9
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 2.9e-26 122.5 110 70.9
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 8.4e-26 120.9 130 62.3
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 8.4e-26 120.9 130 62.3
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 8.4e-26 120.9 130 62.3
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 8.4e-26 120.9 150 54.7
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 1.1e-25 120.6 154 56.5
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 2.4e-25 119.4 131 60.3
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 2.4e-25 119.4 160 56.2
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 3.2e-25 119.0 157 55.4
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 5.4e-25 118.2 150 54.7
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 1.2e-24 117.1 139 59.7
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 2.7e-24 115.9 156 55.1
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 2.7e-24 115.9 159 53.5
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 4.6e-24 115.2 154 52.6
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 4.6e-24 115.2 138 58.7
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 7.8e-24 114.4 197 47.7
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 1.7e-23 113.2 153 52.9
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 2.3e-23 112.8 141 53.9
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 2.3e-23 112.8 141 53.9
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 5.1e-23 111.7 150 55.3
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 5.1e-23 111.7 152 52.0
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 6.6e-23 111.3 156 55.8
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 6.6e-23 111.3 156 55.8
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 8.7e-23 110.9 156 57.1
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 8.7e-23 110.9 148 56.1
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 8.7e-23 110.9 155 51.0
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 1.1e-22 110.5 145 55.2
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.5e-22 110.2 148 56.1
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 5.6e-22 108.2 131 56.5
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 5.6e-22 108.2 146 54.1
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 1.3e-21 107.1 146 52.1
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 1.6e-21 106.7 139 59.0
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 2.1e-21 106.3 154 49.4
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 2.1e-21 106.3 156 52.6
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 2.8e-21 105.9 141 52.5
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 2.8e-21 105.9 144 53.5
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 4.8e-21 105.1 132 56.1
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 4.8e-21 105.1 141 55.3
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 4.8e-21 105.1 154 50.0
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 6.2e-21 104.8 150 49.3
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 1.4e-20 103.6 134 58.2
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.8e-20 103.2 139 54.7
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 4.0e-20 102.1 71 77.5
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 5.3e-20 101.7 151 53.6
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 6.9e-20 101.3 157 52.9
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 9.0e-20 100.9 156 50.0
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 2.0e-19 99.8 128 58.6
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 2.0e-19 99.8 83 67.5
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 3.4e-19 99.0 88 67.0
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 7.6e-19 97.8 157 47.8
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 9.9e-19 97.4 132 52.3
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 2.2e-18 96.3 139 51.8
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 2.2e-18 96.3 102 61.8
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 2.9e-18 95.9 74 73.0
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 4.9e-18 95.1 74 68.9
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 8.4e-18 94.4 147 53.1
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 2.4e-17 92.8 89 64.0
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 2.4e-17 92.8 89 64.0
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 2.4e-17 92.8 106 59.4
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 2.4e-17 92.8 149 51.0
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 7.1e-17 91.3 163 41.7
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 3.5e-16 89.0 140 51.4
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 4.6e-16 88.6 153 44.4
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 1.3e-15 87.0 138 48.6
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 1.7e-15 86.7 82 63.4
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.4e-12 77.0 56 75.0
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 3.1e-12 75.9 107 53.3
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 5.3e-12 75.1 127 49.6
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 1.2e-11 73.9 139 48.9
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 3.4e-11 72.4 131 47.3
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 7.6e-11 71.2 139 44.6
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 7.6e-11 71.2 85 54.1
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 4.2e-09 65.5 133 42.1
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 7.4e-06 54.7 32 87.5


User provided reference genes

Program Settings