Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 5.7e-153 544.3 286 100.0
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 3.3e-76 289.3 282 53.5
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 8.1e-75 284.6 285 54.7
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 7.1e-71 271.6 280 52.9
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 1.7e-48 197.2 293 44.7
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 2.1e-46 190.3 290 40.0
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 8.8e-45 184.9 291 38.8
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 2.0e-44 183.7 258 42.6
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 6.3e-43 178.7 269 40.5
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 3.1e-42 176.4 297 36.4
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 3.1e-42 176.4 290 37.9
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 9.1e-42 174.9 244 39.8
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 2.6e-41 173.3 255 41.2
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 4.5e-41 172.6 258 41.9
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.7e-41 171.8 258 41.9
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 1.0e-40 171.4 233 43.3
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 1.0e-40 171.4 246 39.8
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 1.1e-39 167.9 291 37.1
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 3.9e-37 159.5 245 40.8
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 5.2e-37 159.1 251 38.6
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 6.7e-37 158.7 256 38.7
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 6.7e-37 158.7 244 38.9
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 8.8e-37 158.3 292 33.6
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 2.6e-36 156.8 266 37.6
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 4.4e-36 156.0 238 38.7
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 2.2e-35 153.7 257 38.5
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 2.8e-35 153.3 238 37.8
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 3.7e-35 152.9 246 37.4
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 4.8e-35 152.5 257 38.1
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 1.1e-34 151.4 246 35.4
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 2.4e-34 150.2 247 39.3
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 7.0e-34 148.7 212 44.3
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 1.2e-33 147.9 246 37.4
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 1.2e-33 147.9 281 36.7
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 2.6e-33 146.7 256 36.7
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 4.5e-33 146.0 258 37.6
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 4.5e-33 146.0 251 36.3
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 7.7e-33 145.2 272 36.4
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 1.0e-32 144.8 217 39.2
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 1.0e-32 144.8 244 40.2
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 1.3e-32 144.4 258 36.8
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 2.9e-32 143.3 257 37.7
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 2.9e-32 143.3 292 32.5
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 3.8e-32 142.9 260 33.5
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 1.5e-31 141.0 255 35.3
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 1.5e-31 141.0 255 35.3
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 1.5e-31 141.0 239 38.5
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 2.5e-31 140.2 297 33.0
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 4.2e-31 139.4 288 36.1
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 4.2e-31 139.4 256 36.3
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 4.2e-31 139.4 249 36.5
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 5.5e-31 139.0 285 36.1
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 1.2e-30 137.9 258 34.5
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 1.2e-30 137.9 283 34.6
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 1.2e-30 137.9 252 37.7
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 1.6e-30 137.5 259 34.4
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 1.6e-30 137.5 244 37.7
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 2.7e-30 136.7 230 36.5
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 3.6e-30 136.3 249 34.9
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 8.0e-30 135.2 176 47.2
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 1.8e-29 134.0 235 34.9
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 1.8e-29 134.0 244 36.9
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 4.0e-29 132.9 180 43.3
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 5.2e-29 132.5 248 36.7
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 2.6e-28 130.2 186 38.7
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 4.4e-28 129.4 294 34.0
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 5.7e-28 129.0 254 34.6
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 9.7e-28 128.3 168 43.5
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.3e-27 127.9 261 32.2
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 1.1e-26 124.8 221 37.6
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 2.4e-26 123.6 234 36.8
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 3.1e-26 123.2 219 37.0
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 7.0e-26 122.1 261 32.6
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 1.2e-25 121.3 215 37.7
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 2.7e-25 120.2 237 34.2
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 7.7e-25 118.6 280 30.4
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 2.2e-24 117.1 267 33.7
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 1.1e-23 114.8 241 33.2
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 1.1e-23 114.8 228 32.0
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 1.1e-23 114.8 255 31.4
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 4.2e-23 112.8 247 33.6
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 4.2e-23 112.8 247 33.6
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 9.4e-23 111.7 189 34.4
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 8.0e-22 108.6 236 32.2
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 3.0e-21 106.7 254 28.7
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 5.7e-20 102.4 200 33.5
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.0e-18 95.5 199 33.2
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 2.9e-16 90.1 247 29.6
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 3.2e-15 86.7 220 28.2
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 4.0e-13 79.7 109 41.3
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 6.8e-13 79.0 138 36.2
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.4e-12 76.6 148 34.5
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 5.9e-09 65.9 70 51.4
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 5.9e-09 65.9 247 26.7
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 5.0e-08 62.8 206 29.6
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 7.3e-07 58.9 320 24.1
ATR0626G381 Amborella trichopoda HOM05D002665 ORTHO05D002991 2.1e-06 57.4 164 28.7
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 4.7e-06 56.2 64 43.8


User provided reference genes

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