Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.3e-243 846.3 547 100.0
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 5.0e-73 279.6 452 44.5
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 8.5e-73 278.9 490 45.3
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 6.1e-71 272.7 452 44.5
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.9e-44 183.3 467 38.8
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 6.0e-42 176.4 460 38.5
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.1e-38 164.1 491 32.2
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.3e-36 158.7 464 35.8
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 4.9e-36 156.8 493 33.1
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.5e-34 150.6 148 59.5
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.0e-33 149.1 383 34.2
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.3e-33 148.7 485 32.4
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.9e-33 147.1 381 33.1
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 5.6e-32 143.3 548 34.5
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 7.3e-32 142.9 501 31.3
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 7.3e-32 142.9 452 32.1
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.6e-31 141.7 384 34.1
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 2.1e-31 141.4 467 33.6
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 3.6e-31 140.6 383 32.9
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 4.7e-31 140.2 390 34.1
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.7e-31 140.2 288 38.2
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.4e-30 138.7 389 35.0
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.4e-30 138.7 389 35.0
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 1.4e-30 138.7 455 33.0
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.4e-30 137.9 511 31.9
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 2.4e-30 137.9 499 29.1
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 3.1e-30 137.5 231 44.2
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.0e-30 137.1 382 33.8
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 2.6e-29 134.4 436 32.6
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 9.9e-29 132.5 388 32.0
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.2e-28 131.3 382 33.0
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.9e-28 131.0 556 32.4
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 4.9e-28 130.2 501 33.3
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 4.9e-28 130.2 374 30.5
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 4.9e-28 130.2 494 30.6
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 6.4e-28 129.8 253 40.7
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.4e-27 128.6 379 33.2
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.9e-27 128.3 500 31.4
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 3.2e-27 127.5 249 39.4
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 4.1e-27 127.1 378 32.3
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 5.4e-27 126.7 495 31.3
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.6e-26 125.2 247 38.9
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.1e-26 124.8 241 41.5
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.7e-26 124.4 243 39.1
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.6e-26 123.6 486 29.4
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 6.0e-26 123.2 385 33.2
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 7.8e-26 122.9 480 30.6
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.7e-25 121.7 383 31.6
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.7e-25 121.7 383 31.6
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 3.0e-25 120.9 382 32.7
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 3.0e-25 120.9 382 32.7
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 3.0e-25 120.9 177 46.3
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 3.9e-25 120.6 387 32.0
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.5e-24 118.6 234 40.2
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.9e-24 118.2 492 31.7
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.9e-24 118.2 466 30.7
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.9e-24 118.2 206 42.2
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.5e-24 117.9 445 31.0
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.5e-24 117.9 190 40.5
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 3.3e-24 117.5 237 40.9
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 4.3e-24 117.1 243 37.9
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 5.6e-24 116.7 174 44.8
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 5.6e-24 116.7 241 38.2
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 7.3e-24 116.3 196 41.8
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.2e-23 115.5 551 28.7
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.8e-23 114.4 352 32.4
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.6e-23 114.0 241 37.8
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 4.7e-23 113.6 478 29.5
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 6.2e-23 113.2 502 29.5
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 8.1e-23 112.8 522 28.7
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 8.1e-23 112.8 455 30.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 8.1e-23 112.8 457 31.7
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.4e-22 112.1 497 32.0
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.8e-22 111.7 348 29.9
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.1e-22 110.9 206 40.8
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 3.1e-22 110.9 211 40.3
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 3.1e-22 110.9 244 37.3
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 4.0e-22 110.5 384 32.0
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 5.2e-22 110.2 214 40.7
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 5.2e-22 110.2 490 32.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 6.9e-22 109.8 225 37.3
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 9.0e-22 109.4 211 40.3
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.2e-21 109.0 263 37.6
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.2e-21 109.0 186 40.3
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 2.0e-21 108.2 210 39.5
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 2.6e-21 107.8 385 32.5
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 3.4e-21 107.5 200 38.0
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 4.4e-21 107.1 210 39.0
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 4.4e-21 107.1 581 28.4
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.4e-21 107.1 214 41.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 5.8e-21 106.7 232 39.2
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 5.8e-21 106.7 232 39.2
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 7.6e-21 106.3 211 39.8
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 9.9e-21 105.9 458 29.7
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.7e-20 105.1 358 31.3
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.7e-20 105.1 214 37.9
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.7e-20 105.1 214 39.3
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.7e-20 105.1 251 36.7
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.7e-20 105.1 230 39.1
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 3.8e-20 104.0 358 31.6
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 3.8e-20 104.0 246 37.4
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.1e-19 102.4 210 40.5
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.9e-19 101.7 211 38.9
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.4e-19 101.3 230 38.3
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 3.2e-19 100.9 228 38.2
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.2e-19 100.9 497 29.4
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 4.2e-19 100.5 515 28.7
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 4.2e-19 100.5 496 31.2
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 5.4e-19 100.1 230 37.8
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 7.1e-19 99.8 230 36.1
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 9.3e-19 99.4 251 34.7
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.6e-18 98.6 510 30.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.7e-18 97.8 470 31.9
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 6.0e-18 96.7 392 30.1
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 6.0e-18 96.7 242 37.2
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 7.8e-18 96.3 464 30.2
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.0e-17 95.9 211 35.1
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.3e-17 95.5 214 39.3
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.3e-17 94.7 213 34.3
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.3e-17 94.7 353 31.4
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 3.0e-17 94.4 485 29.3
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 3.0e-17 94.4 353 31.2
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 3.9e-17 94.0 504 32.9
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.9e-17 94.0 494 27.9
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.9e-17 94.0 228 36.0
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 8.7e-17 92.8 435 30.3
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 8.7e-17 92.8 435 30.3
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.9e-16 91.7 534 29.0
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.3e-16 90.5 453 28.9
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.3e-16 90.5 353 30.3
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.6e-15 88.6 411 29.7
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.1e-14 85.9 230 35.7
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 3.1e-14 84.3 226 34.5
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 6.9e-14 83.2 234 34.6
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 9.0e-14 82.8 259 33.2
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.2e-13 82.4 197 35.5
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.5e-13 82.0 230 33.9
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 3.4e-13 80.9 463 28.7
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 3.4e-13 80.9 154 38.3
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 7.6e-13 79.7 184 35.9
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.9e-12 77.8 212 35.4
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 2.9e-12 77.8 151 40.4
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 8.4e-12 76.3 247 32.8
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.1e-11 75.9 97 49.5
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 5.4e-11 73.6 487 24.4
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.2e-10 72.4 229 32.8
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.1e-10 71.6 243 32.9
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.3e-09 68.2 179 34.1
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.9e-08 65.1 496 24.6
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.9e-08 65.1 520 26.5
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.5e-08 64.7 141 36.9
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.5e-08 64.7 191 32.5
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.3e-08 63.9 102 42.2
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 5.6e-08 63.5 146 31.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.1e-07 61.6 219 31.1
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 4.8e-07 60.5 74 50.0
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 6.2e-07 60.1 158 32.3
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.8e-06 58.5 144 34.7
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 3.1e-06 57.8 196 31.6


User provided reference genes

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