Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 7.2e-189 663.7 320 100.0
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 1.7e-142 509.6 319 79.0
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 5.6e-133 478.0 320 71.9
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.8e-131 473.0 320 75.0
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 5.8e-130 468.0 322 69.9
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 2.9e-129 465.7 324 70.4
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 3.8e-129 465.3 322 70.8
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 3.8e-129 465.3 311 73.0
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 6.4e-129 464.5 309 72.2
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 8.4e-129 464.2 325 68.3
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 8.4e-129 464.2 326 68.7
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 8.4e-129 464.2 322 68.3
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 8.4e-129 464.2 322 68.3
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.9e-128 463.0 298 75.2
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 2.4e-128 462.6 322 69.9
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 2.4e-128 462.6 298 75.2
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 3.2e-128 462.2 332 66.6
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 3.2e-128 462.2 315 71.1
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 5.4e-128 461.5 321 69.2
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 5.4e-128 461.5 309 71.5
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 5.4e-128 461.5 299 73.6
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 7.1e-128 461.1 324 70.4
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 7.1e-128 461.1 298 74.8
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 7.1e-128 461.1 310 72.6
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 1.6e-127 459.9 309 70.2
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 2.1e-127 459.5 321 69.5
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 2.1e-127 459.5 299 72.6
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 2.1e-127 459.5 322 68.0
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 2.1e-127 459.5 298 74.2
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 2.1e-127 459.5 309 72.2
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 2.7e-127 459.1 321 70.1
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 4.6e-127 458.4 299 72.6
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.0e-126 457.2 349 65.3
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 1.3e-126 456.8 301 73.8
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.3e-126 456.1 327 67.9
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 2.3e-126 456.1 318 70.1
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 2.3e-126 456.1 299 72.2
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 2.3e-126 456.1 317 69.1
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 3.0e-126 455.7 309 68.6
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 5.1e-126 454.9 315 70.2
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 8.7e-126 454.1 320 69.4
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.9e-125 453.0 310 71.3
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.9e-125 453.0 287 75.6
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 4.3e-125 451.8 321 69.2
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 5.6e-125 451.4 297 72.7
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 9.6e-125 450.7 321 69.2
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.6e-124 449.9 310 71.0
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.4e-123 446.8 325 68.6
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.8e-123 446.4 309 70.9
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 4.0e-123 445.3 300 70.0
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 4.0e-123 445.3 302 69.9
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 5.3e-123 444.9 304 69.1
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 5.3e-123 444.9 319 66.5
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 9.0e-123 444.1 299 72.6
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.4e-122 442.2 315 68.6
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 7.6e-122 441.0 299 70.2
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.3e-121 440.3 321 67.0
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.7e-121 439.9 311 67.8
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 2.2e-121 439.5 306 68.6
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 3.8e-121 438.7 323 68.1
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.4e-120 436.8 295 70.5
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 2.4e-120 436.0 322 65.8
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 3.2e-120 435.6 314 67.8
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 3.2e-120 435.6 313 66.5
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 7.1e-120 434.5 302 68.2
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.6e-119 433.3 302 68.2
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 1.6e-119 433.3 303 68.6
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 2.1e-119 433.0 317 65.3
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 2.7e-119 432.6 302 68.2
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 3.5e-119 432.2 315 65.7
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 4.6e-119 431.8 322 65.2
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 6.0e-119 431.4 323 70.3
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 7.9e-119 431.0 319 66.5
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 1.8e-118 429.9 305 67.5
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 3.0e-118 429.1 316 64.6
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 5.1e-118 428.3 306 67.0
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 1.9e-117 426.4 303 67.7
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 1.9e-117 426.4 303 67.7
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.3e-117 425.2 329 65.3
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.8e-116 422.5 288 69.1
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.8e-116 422.5 314 65.9
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 6.2e-116 421.4 296 70.9
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 3.1e-115 419.1 307 64.5
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 2.6e-114 416.0 298 68.5
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 7.6e-114 414.5 296 67.2
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 4.9e-113 411.8 284 71.5
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.1e-112 410.6 251 77.3
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 3.3e-109 399.1 322 62.1
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 1.3e-108 397.1 294 65.0
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.2e-106 390.6 328 61.9
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 5.5e-104 381.7 322 60.6
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 2.5e-101 372.9 325 57.5
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 9.6e-101 370.9 234 75.2
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 4.8e-100 368.6 303 57.4
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 8.2e-100 367.9 315 57.5
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.0e-98 363.2 288 66.3
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 7.9e-87 324.7 282 55.0
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 1.4e-86 323.9 271 59.8
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 1.8e-86 323.6 320 52.5
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 3.7e-84 315.8 320 51.9
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 8.5e-81 304.7 264 54.9
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.3e-76 290.8 181 74.0
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 1.7e-76 290.4 198 68.2
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 7.0e-75 285.0 184 73.9
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.2e-71 274.2 167 75.4
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.2e-71 274.2 167 75.4
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 6.5e-65 251.9 180 66.1
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 4.4e-61 239.2 270 47.0
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.8e-60 235.7 146 74.0
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 1.6e-55 220.7 157 67.5
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.3e-52 211.1 331 39.3
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 9.2e-51 204.9 127 78.0
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 2.0e-50 203.8 148 68.2
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 1.3e-49 201.1 141 70.2
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 5.9e-42 175.6 193 49.2
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 5.6e-40 169.1 128 60.2
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.6e-39 166.4 99 75.8
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 2.9e-36 156.8 100 70.0
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.1e-35 152.9 115 62.6
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 1.5e-32 144.4 241 38.2
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 1.2e-31 141.4 136 52.9
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 1.4e-30 137.9 89 70.8
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.6e-26 124.4 64 87.5
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 3.0e-25 120.2 67 83.6
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 2.5e-16 90.5 81 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 1.3e-07 61.6 235 23.0
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 1.3e-07 61.6 167 28.1
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 2.1e-07 60.8 209 24.9
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 4.8e-07 59.7 205 25.9
Haze_27091 Corylus avellana HOM05D002999 ORTHO05D003137 8.1e-07 58.9 248 24.2
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 1.8e-06 57.8 38 71.1
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 2.4e-06 57.4 132 28.0
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 2.4e-06 57.4 124 29.8
Psat5g006200 Pisum sativum HOM05D003825 ORTHO05D004491 4.0e-06 56.6 169 23.7
Migut.M00121 Erythranthe guttata HOM05D001610 ORTHO05D001585 5.3e-06 56.2 204 27.0
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 6.9e-06 55.8 124 28.2
TPR.G38203 Trifolium pratense HOM05D003825 ORTHO05D004491 6.9e-06 55.8 169 23.1
Lalb_Chr08g0246621 Lupinus albus HOM05D003825 ORTHO05D004491 9.0e-06 55.5 169 23.7
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 9.0e-06 55.5 242 21.5


User provided reference genes

Program Settings