Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.1e-118 429.1 229 100.0
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 7.2e-74 281.2 219 71.2
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.4e-72 276.9 224 70.5
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.6e-71 272.7 214 70.6
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 3.3e-71 272.3 310 55.5
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 1.0e-67 260.8 232 62.9
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 2.9e-67 259.2 219 66.7
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 6.5e-67 258.1 231 63.2
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 4.2e-66 255.4 227 63.4
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.2e-66 254.6 228 65.4
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 9.4e-66 254.2 228 65.8
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.2e-65 253.8 228 65.8
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.1e-65 253.1 221 64.3
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 2.7e-65 252.7 224 64.3
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 6.1e-65 251.5 228 64.5
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.8e-64 250.0 218 65.6
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 2.3e-64 249.6 229 62.4
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 4.0e-64 248.8 234 63.7
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 5.2e-64 248.4 224 62.9
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 6.8e-64 248.1 234 62.8
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.5e-63 246.9 218 65.1
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.0e-63 246.5 219 63.5
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.0e-63 246.5 231 61.0
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 2.6e-63 246.1 219 63.0
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.6e-63 246.1 219 63.5
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.6e-63 246.1 230 59.6
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 4.4e-63 245.4 215 65.1
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 5.7e-63 245.0 229 61.6
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 7.5e-63 244.6 242 59.1
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 7.5e-63 244.6 233 61.4
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 7.5e-63 244.6 227 61.7
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-62 243.8 217 62.7
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 1.3e-62 243.8 231 61.5
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 1.3e-62 243.8 231 62.3
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.7e-62 243.4 228 63.2
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.7e-62 243.4 236 58.9
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 1.7e-62 243.4 220 62.3
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.2e-62 243.0 229 64.2
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 2.2e-62 243.0 227 60.8
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 2.8e-62 242.7 216 64.4
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.7e-62 242.3 229 64.6
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 3.7e-62 242.3 218 63.8
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 3.7e-62 242.3 231 62.3
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 4.8e-62 241.9 218 63.3
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 4.8e-62 241.9 234 60.7
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 4.8e-62 241.9 231 61.0
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.8e-62 241.9 236 61.0
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 6.3e-62 241.5 227 60.8
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 8.3e-62 241.1 226 60.6
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 8.3e-62 241.1 227 60.8
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 8.3e-62 241.1 227 60.4
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.1e-61 240.7 233 60.5
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.4e-61 240.4 226 61.1
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.4e-61 240.4 218 63.8
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.4e-61 240.4 228 63.2
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 2.4e-61 239.6 229 60.7
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 2.4e-61 239.6 220 64.1
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 2.4e-61 239.6 236 61.0
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 3.1e-61 239.2 236 59.3
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.1e-61 239.2 234 59.0
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 4.1e-61 238.8 233 58.8
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 4.1e-61 238.8 226 59.7
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 4.1e-61 238.8 213 64.3
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 5.3e-61 238.4 227 60.8
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 9.1e-61 237.7 230 61.7
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.2e-60 237.3 223 60.1
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-60 237.3 228 58.3
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.6e-60 236.9 218 64.2
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.6e-60 236.9 229 63.8
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.6e-60 236.9 231 59.3
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.6e-60 236.9 230 61.7
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.0e-60 236.5 234 59.8
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 2.0e-60 236.5 228 61.8
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 2.0e-60 236.5 225 62.2
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.7e-60 236.1 226 61.5
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 3.5e-60 235.7 223 59.6
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 3.5e-60 235.7 227 60.8
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 5.9e-60 235.0 223 58.7
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 7.7e-60 234.6 206 62.1
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 7.7e-60 234.6 210 61.9
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 7.7e-60 234.6 213 62.0
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 7.7e-60 234.6 221 59.3
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 7.7e-60 234.6 228 61.0
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.0e-59 234.2 225 60.0
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.0e-59 234.2 218 61.9
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.3e-59 233.8 283 53.7
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.7e-59 233.4 230 59.6
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.7e-59 233.4 216 59.7
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.7e-59 233.4 221 58.4
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 3.8e-59 232.3 230 58.7
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 3.8e-59 232.3 221 58.8
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 5.0e-59 231.9 226 59.7
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 6.5e-59 231.5 225 58.7
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.1e-58 230.7 226 57.5
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 1.1e-58 230.7 223 59.2
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.5e-58 230.3 226 59.3
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.9e-58 229.9 228 58.8
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 2.5e-58 229.6 226 58.8
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 4.2e-58 228.8 223 57.0
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 5.5e-58 228.4 228 57.5
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.5e-58 228.4 239 56.1
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 7.2e-58 228.0 252 54.0
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 9.4e-58 227.6 228 57.5
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.2e-57 227.3 224 57.6
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.6e-57 226.9 232 58.6
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 3.6e-57 225.7 226 57.1
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 3.6e-57 225.7 226 57.1
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 6.1e-57 224.9 226 56.6
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.8e-56 223.4 210 59.0
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 2.3e-56 223.0 230 55.7
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 2.3e-56 223.0 235 55.3
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 5.2e-56 221.9 264 53.4
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.2e-55 220.7 226 57.5
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 2.0e-55 219.9 228 55.7
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 7.5e-55 218.0 221 58.4
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.7e-54 216.9 243 54.3
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 3.7e-54 215.7 226 57.1
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 4.8e-54 215.3 226 57.1
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 7.7e-52 208.0 226 54.0
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 7.7e-52 208.0 212 54.7
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 2.3e-51 206.5 232 54.3
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.9e-50 203.4 176 65.9
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.2e-50 201.4 231 53.7
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 9.5e-50 201.1 164 67.7
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.0e-48 197.6 179 63.1
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-46 190.7 168 62.5
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.3e-43 180.6 217 52.5
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.6e-41 172.6 210 50.5
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.2e-39 167.5 216 49.1
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 2.6e-39 166.4 169 59.2
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 4.4e-39 165.6 239 46.4
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 5.8e-39 165.2 216 47.2
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 6.4e-38 161.8 232 45.3
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 8.3e-38 161.4 168 57.1
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 8.3e-38 161.4 182 51.1
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 4.1e-37 159.1 154 61.0
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.0e-36 156.8 129 67.4
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 3.5e-36 156.0 144 63.9
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 7.8e-36 154.8 146 57.5
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 6.6e-35 151.8 250 39.6
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.1e-34 151.0 129 65.9
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.3e-34 149.1 126 65.1
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 4.4e-31 139.0 197 47.7
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 5.4e-29 132.1 129 58.9
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 1.2e-28 131.0 224 41.5
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.9e-26 123.6 113 60.2
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.3e-26 122.9 184 42.9
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 4.3e-26 122.5 113 61.1
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.3e-22 110.9 215 37.2
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.7e-22 110.5 271 33.6
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 4.6e-20 102.4 83 65.1
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 3.9e-19 99.4 87 62.1
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 8.6e-19 98.2 189 38.1
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 3.3e-18 96.3 87 58.6
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.6e-15 86.7 173 34.7
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.7e-14 84.0 59 71.2
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 4.9e-14 82.4 51 74.5
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 8.4e-14 81.6 88 54.5
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.4e-13 80.9 99 52.5
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.9e-13 80.5 137 43.1
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 2.4e-13 80.1 86 58.1
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 3.5e-12 76.3 66 63.6
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 4.6e-12 75.9 92 48.9
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.0e-11 74.7 53 69.8
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 2.3e-11 73.6 131 39.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.3e-09 67.8 41 75.6
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 2.8e-09 66.6 61 55.7
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 3.1e-08 63.2 44 70.5
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.6e-07 60.1 245 28.6
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.9e-06 56.6 42 64.3


User provided reference genes

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