Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 9.3e-259 896.3 450 100.0
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.2e-125 454.1 351 68.9
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 6.3e-122 441.8 360 64.2
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.4e-121 440.7 358 65.9
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.8e-121 440.3 323 70.9
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 2.4e-121 439.9 363 64.5
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 3.1e-121 439.5 365 64.4
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.5e-120 437.2 337 67.4
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.5e-120 437.2 364 64.3
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.6e-120 436.4 374 62.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 2.6e-120 436.4 346 65.3
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 3.4e-120 436.0 349 64.2
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 1.0e-119 434.5 329 66.9
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.0e-119 434.5 361 62.6
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 3.8e-119 432.6 355 63.9
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 3.8e-119 432.6 357 63.9
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.8e-119 432.6 349 64.5
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 8.5e-119 431.4 352 62.2
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.9e-118 430.3 364 62.6
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 7.2e-118 428.3 362 62.4
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.2e-117 427.6 361 62.6
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.6e-117 427.2 373 60.9
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 3.6e-117 426.0 342 64.9
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 6.1e-117 425.2 361 62.0
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.0e-116 424.5 371 61.2
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.8e-116 423.7 332 67.2
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 3.9e-116 422.5 347 62.5
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 3.9e-116 422.5 320 67.8
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 3.9e-116 422.5 360 62.2
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 5.1e-116 422.2 369 62.3
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 8.8e-116 421.4 353 62.9
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.5e-115 420.6 328 64.6
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 7.4e-115 418.3 336 64.0
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 9.7e-115 417.9 378 59.5
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 9.7e-115 417.9 334 64.1
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.7e-114 417.2 347 63.4
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 3.7e-114 416.0 352 62.5
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 4.8e-114 415.6 336 63.4
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 6.3e-114 415.2 399 57.6
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 8.2e-114 414.8 352 62.5
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.4e-113 414.1 370 59.5
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.8e-113 413.7 349 61.0
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.8e-113 413.7 372 60.8
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 4.1e-113 412.5 369 60.4
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 5.3e-113 412.1 327 64.5
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 9.1e-113 411.4 325 64.0
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.2e-112 411.0 357 62.2
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.5e-112 410.6 329 63.5
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.5e-112 410.6 349 61.9
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.5e-112 410.6 356 62.1
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.0e-112 410.2 369 60.7
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 2.6e-112 409.8 329 63.8
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.4e-112 409.5 331 62.8
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 7.7e-112 408.3 368 61.1
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 7.7e-112 408.3 305 67.2
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 1.0e-111 407.9 319 66.1
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 2.9e-111 406.4 370 57.3
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.4e-110 404.1 340 62.9
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.9e-110 403.7 330 64.2
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.9e-110 403.7 319 65.5
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.5e-110 403.3 361 60.4
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.2e-110 402.9 357 59.7
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 5.5e-110 402.1 366 58.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.7e-109 399.8 339 61.9
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 4.7e-109 399.1 323 63.5
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 4.7e-109 399.1 360 60.0
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 4.7e-109 399.1 319 64.6
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 6.1e-109 398.7 252 77.8
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 2.3e-108 396.7 388 56.7
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 3.0e-108 396.4 320 64.4
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 3.9e-108 396.0 365 55.9
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.9e-108 396.0 322 63.4
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.9e-108 396.0 322 63.4
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 3.9e-108 396.0 346 61.0
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 5.1e-108 395.6 367 59.7
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 6.7e-108 395.2 349 57.9
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.5e-107 394.0 359 58.2
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.5e-107 394.0 324 61.7
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 7.4e-107 391.7 376 57.7
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 9.7e-107 391.3 321 64.2
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.3e-106 391.0 252 75.4
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 2.8e-106 389.8 252 73.8
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.8e-106 389.8 356 58.4
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 6.3e-106 388.7 328 61.0
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 8.2e-106 388.3 334 61.7
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.8e-105 387.1 331 58.6
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.5e-104 384.0 402 53.2
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 1.5e-104 384.0 318 62.3
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 2.0e-104 383.6 275 67.6
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.6e-104 383.3 361 56.8
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.0e-103 381.3 344 59.6
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 2.2e-103 380.2 364 56.9
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.2e-103 380.2 334 59.9
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.0e-103 379.0 366 56.3
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 6.5e-103 378.6 361 57.6
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 6.5e-103 378.6 360 57.2
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.9e-102 377.1 371 56.1
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.9e-102 377.1 361 57.3
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 4.2e-102 375.9 363 57.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 4.2e-102 375.9 339 59.0
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 7.2e-102 375.2 374 56.7
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 7.2e-102 375.2 355 58.3
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.4e-102 374.8 366 55.2
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.2e-101 374.4 328 59.1
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.6e-101 374.0 343 57.4
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 3.6e-101 372.9 361 57.1
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.0e-100 369.8 335 59.7
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 6.7e-100 368.6 328 60.4
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 8.8e-100 368.2 336 59.2
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-99 367.5 345 57.4
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-99 367.5 331 59.5
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.3e-99 366.3 252 73.8
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 5.7e-99 365.5 335 60.0
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 7.4e-99 365.2 331 59.2
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 7.4e-99 365.2 315 60.0
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 9.7e-99 364.8 339 58.4
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.7e-98 364.0 331 59.2
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.7e-98 364.0 335 59.7
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 3.7e-98 362.8 346 56.4
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 4.8e-98 362.5 352 57.4
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 6.3e-98 362.1 335 59.4
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 9.1e-97 358.2 337 57.9
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 9.1e-97 358.2 337 57.9
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.0e-95 354.8 338 57.7
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.0e-95 354.8 338 57.7
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 1.3e-95 354.4 331 57.7
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.7e-95 354.0 337 57.3
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.1e-93 347.1 321 51.7
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.2e-91 341.3 308 60.1
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.6e-91 340.1 333 53.2
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 7.0e-89 332.0 461 44.5
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.6e-88 330.9 250 62.4
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.7e-87 327.4 336 49.4
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 4.2e-86 322.8 315 56.2
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.6e-85 320.9 256 56.6
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 2.9e-79 300.1 361 46.5
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.9e-79 300.1 252 62.3
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 8.0e-77 292.0 215 66.5
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.8e-68 264.2 194 70.6
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 6.2e-53 212.6 261 41.8
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 5.4e-49 199.5 270 40.7
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.5e-46 190.7 153 63.4
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 5.6e-46 189.5 140 67.1
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 3.5e-32 143.7 223 40.4
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.4e-28 131.7 189 40.7
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.4e-20 105.1 213 35.2
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.5e-19 101.7 103 53.4
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.0e-19 101.3 156 41.0
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 8.4e-18 95.9 239 27.6
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 7.4e-14 82.8 132 43.2
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 2.8e-13 80.9 109 47.7
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 1.9e-09 68.2 56 57.1


User provided reference genes

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