Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.1e-309 1065.8 544 100.0
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.9e-234 815.8 532 77.8
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 3.3e-234 815.1 516 79.1
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 2.4e-232 808.9 526 77.9
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 4.2e-229 798.1 528 76.7
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 9.3e-229 797.0 530 77.0
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 2.1e-228 795.8 525 77.0
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 4.6e-228 794.7 526 75.3
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.0e-227 793.5 532 75.8
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.3e-227 793.1 532 75.6
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.1e-226 790.0 526 75.7
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.3e-226 788.5 530 76.6
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 7.3e-226 787.3 532 75.4
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 1.6e-225 786.2 524 76.3
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.4e-224 782.3 524 74.6
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 6.9e-224 780.8 528 73.3
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 6.9e-224 780.8 524 76.7
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-223 779.6 524 76.3
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-223 779.6 524 76.3
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.5e-223 779.6 524 76.3
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.6e-223 778.9 530 75.7
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 3.4e-223 778.5 544 71.5
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.4e-223 778.5 524 74.4
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.2e-222 775.8 522 76.1
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 2.9e-222 775.4 522 74.9
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 4.9e-222 774.6 525 75.0
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 6.4e-222 774.2 520 76.5
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 2.4e-221 772.3 521 75.2
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 7.1e-221 770.8 523 75.3
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 7.1e-221 770.8 523 75.5
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 9.3e-221 770.4 519 75.5
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-220 770.0 523 75.5
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.2e-220 770.0 523 75.5
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.2e-220 770.0 522 75.3
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.6e-220 769.6 524 75.2
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 3.5e-220 768.5 526 73.2
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 7.9e-220 767.3 519 75.3
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 2.3e-219 765.8 524 74.8
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 5.1e-219 764.6 524 74.2
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 1.1e-218 763.5 530 73.2
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-218 763.1 524 74.2
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 3.3e-218 761.9 523 74.6
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 4.3e-218 761.5 524 73.9
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 4.3e-218 761.5 542 72.7
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.6e-217 759.6 524 73.5
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.6e-217 759.6 527 72.7
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 2.8e-217 758.8 521 74.7
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 3.7e-217 758.4 541 70.6
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.8e-216 756.1 526 74.5
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 2.4e-216 755.7 525 72.6
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.1e-216 755.4 524 72.5
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.0e-216 755.0 524 71.8
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 9.0e-216 753.8 525 71.6
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.2e-215 753.4 465 80.4
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.0e-215 752.7 528 73.9
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 3.4e-215 751.9 527 73.1
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.5e-215 751.5 528 71.8
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.7e-214 749.6 534 71.0
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 2.9e-214 748.8 467 79.7
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 3.2e-213 745.3 518 73.9
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 5.5e-213 744.6 528 72.0
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 2.1e-212 742.7 503 73.6
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 4.6e-212 741.5 519 72.3
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.3e-211 740.0 524 70.6
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.8e-211 739.6 482 76.3
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 2.3e-211 739.2 535 69.3
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 3.9e-211 738.4 518 72.4
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 6.7e-211 737.6 523 72.5
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.1e-210 736.9 540 69.1
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 2.5e-210 735.7 540 69.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 9.6e-210 733.8 490 74.1
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 3.7e-209 731.9 526 69.6
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.4e-208 729.9 522 70.9
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 4.0e-208 728.4 483 74.7
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 4.0e-208 728.4 522 70.3
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 9.0e-208 727.2 523 70.2
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 2.0e-207 726.1 523 70.0
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.6e-207 725.7 524 70.4
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 5.8e-207 724.5 519 70.1
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.0e-206 723.8 523 70.2
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.9e-206 722.2 525 70.5
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.8e-206 721.8 523 70.0
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 2.7e-204 715.7 524 71.2
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.6e-204 714.9 526 69.4
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.3e-203 713.4 520 70.0
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 5.1e-203 711.4 508 71.3
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.3e-202 708.8 528 69.3
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 4.3e-202 708.4 518 68.7
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 6.3e-201 704.5 438 80.4
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 5.9e-199 698.0 540 66.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.1e-197 693.7 540 66.1
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.1e-196 689.5 526 67.9
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.1e-194 683.7 528 65.7
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 2.0e-194 682.9 520 66.0
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 4.3e-194 681.8 533 65.5
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 5.7e-194 681.4 530 67.4
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 7.4e-194 681.0 531 65.2
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.3e-193 680.2 528 65.7
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 2.4e-192 676.0 530 64.5
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 6.9e-192 674.5 454 73.6
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 3.4e-191 672.2 535 63.6
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 7.7e-191 671.0 520 65.4
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 2.5e-189 666.0 520 65.2
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 3.6e-188 662.1 523 64.1
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.0e-187 660.6 463 69.3
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.4e-187 660.2 459 70.6
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 3.9e-187 658.7 534 62.4
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 5.1e-187 658.3 525 63.0
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 2.6e-183 646.0 441 74.1
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.8e-182 642.1 528 60.4
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 2.2e-177 626.3 537 59.6
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 9.1e-176 620.9 528 58.9
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.3e-174 617.1 537 57.2
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 3.2e-173 612.5 519 60.9
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.0e-167 593.2 395 74.2
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.9e-166 589.3 391 75.2
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.3e-161 571.6 389 72.8
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 7.0e-160 568.2 463 61.1
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 8.6e-158 561.2 536 55.0
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 4.5e-151 538.9 394 67.3
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 5.0e-150 535.4 523 55.4
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 6.1e-148 528.5 385 67.3
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.6e-146 523.1 344 76.7
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 9.5e-141 504.6 321 77.3
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 5.8e-138 495.4 364 67.6
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.7e-129 466.1 474 48.7
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.1e-127 460.3 499 48.1
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 4.6e-127 459.1 325 67.7
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 8.1e-124 448.4 456 49.1
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 4.0e-115 419.5 504 44.8
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 2.3e-102 377.1 542 37.3
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 9.3e-96 355.1 223 79.4
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.2e-89 334.0 251 68.1
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 5.9e-74 282.7 194 73.2
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.2e-64 249.2 187 69.5
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.6e-63 248.1 167 74.3
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 8.2e-60 235.7 180 66.1
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 7.5e-53 212.6 173 60.7
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.5e-45 188.3 162 58.0
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 5.7e-45 186.4 140 68.6
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.4e-43 181.8 138 68.1
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 7.7e-42 176.0 150 62.7
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 7.3e-32 142.9 143 56.6
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.0e-30 137.1 97 69.1
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 8.9e-30 136.0 148 52.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 5.4e-27 126.7 141 52.5
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 6.2e-23 113.2 75 77.3
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.4e-19 101.3 491 23.8
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.2e-18 99.0 71 67.6
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 8.9e-14 82.8 67 59.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 8.9e-14 82.8 67 59.7
Mapoly0047s0018 Marchantia polymorpha HOM05D011351 ORTHO05D013707 1.5e-08 65.5 194 25.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.9e-08 65.1 46 63.0
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 4.3e-08 63.9 45 62.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.6e-07 62.0 46 65.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.6e-07 62.0 46 60.9


User provided reference genes

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