Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 1.6e-237 825.9 476 100.0
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.5e-86 324.3 509 43.6
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 4.5e-86 322.8 471 45.0
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 1.9e-76 290.8 481 39.9
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 9.4e-76 288.5 432 44.4
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 2.3e-74 283.9 470 42.8
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 3.9e-74 283.1 374 48.7
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 1.5e-70 271.2 372 45.2
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 6.1e-67 259.2 435 41.1
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 1.3e-64 251.5 429 38.0
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.1e-63 248.4 438 40.9
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 1.1e-63 248.4 521 36.9
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 2.4e-63 247.3 428 39.3
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 5.3e-63 246.1 480 38.3
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 1.2e-62 245.0 487 37.4
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 2.0e-62 244.2 445 39.6
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 5.9e-62 242.7 445 39.3
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 2.9e-61 240.4 435 40.2
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 2.9e-61 240.4 436 39.4
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 5.0e-61 239.6 379 41.4
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 3.2e-60 236.9 428 37.1
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 5.5e-60 236.1 436 39.7
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 2.1e-59 234.2 428 37.6
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 8.0e-59 232.3 425 36.9
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 1.0e-58 231.9 434 39.9
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 3.0e-58 230.3 517 35.6
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 5.7e-57 226.1 433 40.0
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 1.1e-55 221.9 491 36.5
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 1.1e-55 221.9 428 38.1
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 9.1e-55 218.8 484 35.7
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 1.2e-54 218.4 423 37.6
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 1.6e-54 218.0 482 35.9
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 3.5e-54 216.9 440 39.5
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 4.5e-54 216.5 438 37.9
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 5.9e-54 216.1 494 36.4
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 7.7e-54 215.7 434 38.0
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 1.0e-53 215.3 429 38.0
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 3.8e-53 213.4 452 36.7
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 6.5e-53 212.6 311 43.4
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 6.5e-53 212.6 483 34.8
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 1.5e-52 211.5 478 35.8
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 1.9e-52 211.1 450 37.1
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 1.9e-52 211.1 491 38.5
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 4.2e-52 209.9 427 37.0
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 5.5e-52 209.5 413 38.7
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 9.4e-52 208.8 411 38.9
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 9.4e-52 208.8 355 40.6
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 9.4e-52 208.8 387 38.0
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 1.6e-51 208.0 430 37.0
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 2.1e-51 207.6 426 38.3
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 2.1e-51 207.6 430 36.5
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 3.6e-51 206.8 355 40.3
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 3.6e-51 206.8 428 36.9
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.4e-50 204.9 462 35.5
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 3.0e-50 203.8 424 38.7
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 5.2e-50 203.0 448 35.0
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.2e-48 197.6 373 39.7
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 2.8e-48 197.2 429 33.3
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 3.7e-48 196.8 482 32.8
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 6.3e-48 196.1 425 36.5
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 6.3e-48 196.1 451 34.6
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 8.3e-48 195.7 479 34.2
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 8.3e-48 195.7 479 34.9
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 4.1e-47 193.4 447 35.3
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 9.1e-47 192.2 440 37.0
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 1.2e-46 191.8 327 39.8
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 2.7e-46 190.7 444 35.6
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 2.7e-46 190.7 406 37.7
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 3.5e-46 190.3 512 34.0
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 5.9e-46 189.5 515 32.8
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 7.7e-46 189.1 474 35.0
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.0e-45 188.7 397 36.8
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 5.0e-45 186.4 520 33.3
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 6.5e-45 186.0 319 41.1
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 8.6e-45 185.7 447 34.5
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 2.1e-43 181.0 441 33.8
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 2.1e-43 181.0 463 33.7
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 2.8e-43 180.6 420 35.0
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 6.1e-43 179.5 416 34.1
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 1.4e-42 178.3 461 33.8
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 3.0e-42 177.2 310 36.8
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.5e-41 174.9 433 36.7
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 3.4e-41 173.7 463 34.3
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 4.4e-41 173.3 494 30.8
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 8.3e-40 169.1 431 32.9
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.4e-39 168.3 422 34.1
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 9.2e-39 165.6 391 34.8
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 2.0e-38 164.5 364 34.9
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 2.7e-38 164.1 367 34.6
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 1.0e-37 162.2 382 36.4
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.3e-37 161.8 467 32.5
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 9.5e-36 155.6 425 30.6
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 1.8e-34 151.4 383 35.0
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 1.8e-34 151.4 383 35.0
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 4.0e-34 150.2 507 30.4
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 1.2e-33 148.7 383 35.0
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.0e-33 147.9 369 32.5
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.3e-32 145.2 183 48.1
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 2.2e-32 144.4 483 30.6
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 2.9e-32 144.1 314 35.4
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 3.2e-31 140.6 258 38.8
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 1.2e-30 138.7 373 32.7
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 2.7e-30 137.5 437 31.6
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 4.6e-30 136.7 447 30.4
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 6.0e-30 136.3 301 36.5
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 1.3e-29 135.2 363 32.8
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 1.2e-27 128.6 178 44.9
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 4.0e-26 123.6 427 30.7
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.2e-25 122.1 208 38.5
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 2.6e-25 120.9 308 32.8
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 2.0e-22 111.3 440 28.2
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.5e-20 104.4 391 29.7
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 4.0e-18 97.1 166 38.6
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 3.4e-17 94.0 226 33.2
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 1.6e-14 85.1 67 62.7
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 7.3e-12 76.3 93 43.0
AUR62041984 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.2e-09 68.9 75 53.3


User provided reference genes

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