Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22618 Selenicereus undatus HOM05D001475 ORTHO05D012622 2.9e-45 184.9 96 100.0
Sc20g0001710 Simmondsia chinensis HOM05D001475 ORTHO05D001525 7.1e-15 84.0 60 63.3
Medtr1g094660 Medicago truncatula HOM05D001475 ORTHO05D001525 5.2e-10 67.8 53 49.1
Phvul.007G096900 Phaseolus vulgaris HOM05D001475 ORTHO05D001525 1.2e-09 66.6 53 50.9
Gorai.011G238200 Gossypium raimondii HOM05D001475 ORTHO05D001525 2.6e-09 65.5 54 50.0
Glyma.20G181400 Glycine max HOM05D001475 ORTHO05D001525 3.4e-09 65.1 53 49.1
Glyma.10G209200 Glycine max HOM05D001475 ORTHO05D001525 4.4e-09 64.7 53 47.2
VMungo0720G0101 Vigna mungo HOM05D001475 ORTHO05D001525 5.8e-09 64.3 53 49.1
Psat6g182200 Pisum sativum HOM05D001475 ORTHO05D001525 9.9e-09 63.5 53 47.2
arahy.Tifrunner.gnm1.ann1.FTPE9D Arachis hypogaea HOM05D001475 ORTHO05D001525 2.2e-08 62.4 88 42.0
MSTRG.27478 Avicennia marina HOM05D001475 ORTHO05D001525 2.2e-08 62.4 92 39.1
arahy.Tifrunner.gnm1.ann1.CHB2FZ Arachis hypogaea HOM05D001475 ORTHO05D012622 3.8e-08 61.6 88 40.9
Actinidia06752 Actinidia chinensis HOM05D001475 ORTHO05D001525 8.4e-08 60.5 100 38.0
arahy.Tifrunner.gnm1.ann1.B29LWX Arachis hypogaea HOM05D001475 ORTHO05D001525 8.4e-08 60.5 61 42.6
arahy.Tifrunner.gnm1.ann1.Z5DA2B Arachis hypogaea HOM05D001475 ORTHO05D001525 8.4e-08 60.5 61 42.6
Lj5g0007098 Lotus japonicus HOM05D001475 ORTHO05D001525 8.4e-08 60.5 86 36.0
Duzib114G0393 Durio zibethinus HOM05D001475 ORTHO05D001525 1.4e-07 59.7 54 48.1
VMungo0720G1261 Vigna mungo HOM05D001475 ORTHO05D001525 1.4e-07 59.7 60 40.0
CSS0004130 Camellia sinensis var. sinensis HOM05D001475 ORTHO05D001525 1.9e-07 59.3 87 40.2
Prupe.2G210600 Prunus persica HOM05D001475 ORTHO05D001525 1.9e-07 59.3 48 47.9
Ciclev10030565m.g Citrus clementina HOM05D001475 ORTHO05D001525 2.4e-07 58.9 50 48.0
Glyma.02G163200 Glycine max HOM05D001475 ORTHO05D001525 2.4e-07 58.9 79 34.2
MD00G1214200 Malus domestica HOM05D001475 ORTHO05D001525 4.2e-07 58.2 48 47.9
PGR142G1139 Punica granatum HOM05D001475 ORTHO05D001525 4.2e-07 58.2 90 34.4
RcHm_v2.0_Chr1g0362891 Rosa chinensis HOM05D001475 ORTHO05D001525 4.2e-07 58.2 89 33.7
AL1G61880 Arabidopsis lyrata HOM05D001475 ORTHO05D001525 5.4e-07 57.8 55 47.3
COL.COLO4_12164 Corchorus olitorius HOM05D001475 ORTHO05D001525 5.4e-07 57.8 55 47.3
SGA_v2.0_scaffold13G06378 Striga asiatica HOM05D001475 ORTHO05D001525 5.4e-07 57.8 81 37.0
Eucgr.G02858 Eucalyptus grandis HOM05D001475 ORTHO05D001525 7.1e-07 57.4 48 47.9
FAN10G0155 Fragaria x ananassa HOM05D001475 ORTHO05D001525 7.1e-07 57.4 98 30.6
FAN10G0188 Fragaria x ananassa HOM05D001475 ORTHO05D001525 7.1e-07 57.4 98 30.6
Lalb_Chr06g0170361 Lupinus albus HOM05D001475 ORTHO05D001525 7.1e-07 57.4 61 41.0
Sed0012516 Sechium edule HOM05D001475 ORTHO05D001525 7.1e-07 57.4 53 47.2
SalBow4G3271 Salvia bowleyana HOM05D001475 ORTHO05D001525 9.3e-07 57.0 88 40.9
Thecc.10G078700 Theobroma cacao HOM05D001475 ORTHO05D001525 9.3e-07 57.0 54 46.3
CANSAT56G2467 Cannabis sativa HOM05D001475 ORTHO05D001525 1.2e-06 56.6 46 50.0
Dinv36411 Davidia involucrata HOM05D001475 ORTHO05D001525 1.2e-06 56.6 41 51.2
Potri.010G225200 Populus trichocarpa HOM05D001475 ORTHO05D001525 1.2e-06 56.6 52 48.1
RcHm_v2.0_Chr2g0140691 Rosa chinensis HOM05D001475 ORTHO05D001525 1.2e-06 56.6 48 45.8
AT1G53390 Arabidopsis thaliana HOM05D001475 ORTHO05D001525 1.6e-06 56.2 55 47.3
EL10Ac2g03610 Beta vulgaris HOM05D001475 ORTHO05D001525 1.6e-06 56.2 51 49.0
Rhsim03G0118400 Rhododendron simsii HOM05D001475 ORTHO05D001525 1.6e-06 56.2 43 51.2
Sabra10G0174100 Salix brachista HOM05D001475 ORTHO05D001525 1.6e-06 56.2 49 49.0
SalBow4G0196 Salvia bowleyana HOM05D001475 ORTHO05D001525 1.6e-06 56.2 88 40.9
GSVIVG01016240001 Vitis vinifera HOM05D001475 ORTHO05D001525 1.6e-06 56.2 53 43.4
A05p18290 Brassica napus HOM05D001475 ORTHO05D001525 2.1e-06 55.8 44 52.3
BraA05t20723Z Brassica rapa HOM05D001475 ORTHO05D001525 2.1e-06 55.8 44 52.3
FvH4_7g18960 Fragaria vesca HOM05D001475 ORTHO05D001525 2.1e-06 55.8 98 30.6
Oeu020819.1 Olea europaea HOM05D001475 ORTHO05D001525 2.1e-06 55.8 41 51.2
RcHm_v2.0_Chr2g0140701 Rosa chinensis HOM05D001475 ORTHO05D001525 2.1e-06 55.8 48 45.8
TWI38G0008 Tripterygium wilfordii HOM05D001475 ORTHO05D001525 2.1e-06 55.8 60 46.7
BcaB07g33334 Brassica carinata HOM05D001475 ORTHO05D001525 2.7e-06 55.5 55 45.5
BcaC08g43525 Brassica carinata HOM05D001475 ORTHO05D001525 2.7e-06 55.5 55 45.5
A06p01050 Brassica napus HOM05D001475 ORTHO05D001525 2.7e-06 55.5 55 45.5
C06p09150 Brassica napus HOM05D001475 ORTHO05D001525 2.7e-06 55.5 55 45.5
BolC6t35990H Brassica oleracea HOM05D001475 ORTHO05D001525 2.7e-06 55.5 55 45.5
BraA06t23333Z Brassica rapa HOM05D001475 ORTHO05D001525 2.7e-06 55.5 55 45.5
AUR62027966 Chenopodium quinoa HOM05D001475 ORTHO05D001525 2.7e-06 55.5 59 45.8
FAN05G0763 Fragaria x ananassa HOM05D001475 ORTHO05D012622 2.7e-06 55.5 61 39.3
FAN06G3894 Fragaria x ananassa HOM05D001475 ORTHO05D001525 2.7e-06 55.5 98 30.6
Eucgr.B02530 Eucalyptus grandis HOM05D001475 ORTHO05D001525 3.5e-06 55.1 99 30.3
FAN14G4738 Fragaria x ananassa HOM05D001475 ORTHO05D012622 3.5e-06 55.1 61 39.3
Lj6g0006446 Lotus japonicus HOM05D001475 ORTHO05D001525 3.5e-06 55.1 53 37.7
PSO339G1722 Papaver somniferum HOM05D001475 ORTHO05D001525 3.5e-06 55.1 45 51.1
BcaB02g10922 Brassica carinata HOM05D001475 ORTHO05D001525 4.6e-06 54.7 44 50.0
A06p01040 Brassica napus HOM05D001475 ORTHO05D001525 4.6e-06 54.7 49 42.9
BraA06t23332Z Brassica rapa HOM05D001475 ORTHO05D001525 4.6e-06 54.7 49 42.9
CAN.G922.1 Capsicum annuum HOM05D001475 ORTHO05D001525 4.6e-06 54.7 51 47.1
DCAR_006430 Daucus carota HOM05D001475 ORTHO05D001525 4.6e-06 54.7 40 55.0
FAN03G2688 Fragaria x ananassa HOM05D001475 ORTHO05D001525 4.6e-06 54.7 98 29.6
Lj3C882T4 Lonicera japonica HOM05D001475 ORTHO05D001525 4.6e-06 54.7 98 32.7
Lalb_Chr19g0137101 Lupinus albus HOM05D001475 ORTHO05D001525 4.6e-06 54.7 58 39.7
Zm00001eb419670 Zea mays HOM05D001475 ORTHO05D001525 4.6e-06 54.7 94 26.6
BcaC08g44087 Brassica carinata HOM05D001475 ORTHO05D001525 6.0e-06 54.3 44 50.0
C06p14890 Brassica napus HOM05D001475 ORTHO05D001525 6.0e-06 54.3 44 50.0
BolC6t36668H Brassica oleracea HOM05D001475 ORTHO05D001525 6.0e-06 54.3 44 50.0
CARHR131490 Cardamine hirsuta HOM05D001475 ORTHO05D001525 6.0e-06 54.3 54 40.7
Lsat_1_v5_gn_2_112781 Lactuca sativa HOM05D001475 ORTHO05D001525 6.0e-06 54.3 53 43.4
Nn2g13747 Nelumbo nucifera HOM05D001475 ORTHO05D001525 6.0e-06 54.3 56 44.6
SHI08929 Sapria himalayana HOM05D001475 ORTHO05D001525 6.0e-06 54.3 46 43.5
Carub.0004s1887 Capsella rubella HOM05D001475 ORTHO05D001525 7.8e-06 53.9 54 38.9
PSO063G1667 Papaver somniferum HOM05D001475 ORTHO05D001525 7.8e-06 53.9 77 35.1
QL01p020943 Quercus lobata HOM05D001475 ORTHO05D001525 7.8e-06 53.9 73 35.6
Sed0015661 Sechium edule HOM05D001475 ORTHO05D001525 7.8e-06 53.9 53 43.4
Sc09g0006160 Simmondsia chinensis HOM05D001475 ORTHO05D001525 7.8e-06 53.9 54 44.4


User provided reference genes

Program Settings