Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.5e-189 665.2 326 100.0
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.5e-80 303.9 211 75.8
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 1.1e-78 297.7 178 79.2
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 6.9e-78 295.0 180 77.8
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 2.6e-77 293.1 207 72.5
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 2.2e-76 290.0 190 75.3
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 2.2e-76 290.0 165 83.6
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 2.9e-76 289.7 154 87.7
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 2.9e-76 289.7 154 88.3
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 6.4e-76 288.5 167 80.8
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 8.4e-76 288.1 154 85.7
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 1.4e-75 287.3 172 79.1
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 1.9e-75 287.0 174 79.3
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 3.2e-75 286.2 168 81.5
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 1.2e-74 284.3 151 87.4
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.2e-74 284.3 178 75.8
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 2.1e-74 283.5 154 85.7
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 2.7e-74 283.1 151 86.8
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 4.6e-74 282.3 159 83.6
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 4.6e-74 282.3 152 86.8
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 6.0e-74 282.0 154 86.4
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 6.0e-74 282.0 168 81.0
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 7.8e-74 281.6 192 71.4
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 7.8e-74 281.6 166 81.3
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 7.8e-74 281.6 166 81.3
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 1.0e-73 281.2 187 74.3
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 1.0e-73 281.2 152 86.8
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 1.3e-73 280.8 190 74.7
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 1.7e-73 280.4 151 86.1
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 3.0e-73 279.6 160 81.9
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 3.9e-73 279.3 165 81.2
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 5.1e-73 278.9 166 80.7
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 5.1e-73 278.9 161 84.5
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 5.1e-73 278.9 158 82.9
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 5.1e-73 278.9 182 74.7
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 5.1e-73 278.9 152 84.2
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 6.6e-73 278.5 157 84.7
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 8.7e-73 278.1 155 85.2
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 1.9e-72 276.9 152 84.9
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.9e-72 276.9 172 77.9
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 3.3e-72 276.2 152 84.9
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 3.3e-72 276.2 161 83.2
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 3.3e-72 276.2 159 85.5
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 7.3e-72 275.0 153 83.7
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 7.3e-72 275.0 156 80.8
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 7.3e-72 275.0 172 77.3
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 9.6e-72 274.6 166 80.1
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 9.6e-72 274.6 194 71.6
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 1.3e-71 274.2 152 84.2
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 1.3e-71 274.2 193 71.0
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.6e-71 273.9 158 81.6
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 2.1e-71 273.5 152 82.9
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 2.8e-71 273.1 160 80.6
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 6.2e-71 271.9 152 82.9
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.1e-70 271.2 186 73.1
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.8e-70 270.4 159 83.6
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.8e-70 270.4 169 76.3
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 3.1e-70 269.6 182 71.4
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 3.1e-70 269.6 172 75.0
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 1.5e-69 267.3 154 83.1
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 1.5e-69 267.3 155 82.6
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 2.6e-69 266.5 185 70.8
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 2.6e-69 266.5 155 81.9
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 3.4e-69 266.2 152 81.6
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 3.4e-69 266.2 158 79.7
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 4.5e-69 265.8 216 64.4
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 7.6e-69 265.0 158 79.7
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 9.9e-69 264.6 152 82.9
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 9.9e-69 264.6 152 82.9
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 1.7e-68 263.8 168 75.0
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 1.7e-68 263.8 153 79.1
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 2.9e-68 263.1 153 79.7
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 4.2e-67 259.2 169 74.0
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 4.2e-67 259.2 152 80.9
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 2.1e-66 256.9 164 76.8
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 3.5e-66 256.1 159 77.4
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 3.5e-66 256.1 152 80.3
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 3.5e-66 256.1 171 74.9
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 4.6e-66 255.8 164 76.8
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 4.6e-66 255.8 164 76.8
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 6.0e-66 255.4 154 81.8
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.3e-65 254.2 164 76.2
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 5.1e-65 252.3 190 68.4
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 4.3e-64 249.2 133 86.5
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 5.6e-64 248.8 150 76.0
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 7.4e-64 248.4 160 76.2
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 9.6e-64 248.1 152 77.0
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.3e-63 247.7 158 76.6
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 2.8e-63 246.5 167 76.0
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 6.2e-63 245.4 151 76.8
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 1.1e-62 244.6 151 76.2
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.8e-62 243.8 158 72.2
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 2.4e-62 243.4 170 69.4
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 2.4e-62 243.4 159 73.6
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 2.4e-62 243.4 159 73.6
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 2.4e-62 243.4 159 73.6
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 2.4e-62 243.4 152 75.7
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 2.6e-61 240.0 151 73.5
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 9.9e-61 238.0 152 72.4
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 2.2e-60 236.9 150 71.3
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.9e-60 236.5 159 70.4
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 3.8e-60 236.1 155 77.4
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 1.1e-59 234.6 153 73.2
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 1.1e-59 234.6 153 73.2
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 3.2e-59 233.0 145 72.4
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 9.3e-59 231.5 162 71.0
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 1.1e-56 224.6 156 67.9
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 4.3e-56 222.6 159 71.1
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 9.6e-56 221.5 154 64.9
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 3.1e-54 216.5 163 68.7
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 3.4e-53 213.0 151 69.5
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 4.5e-53 212.6 151 68.9
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 5.8e-53 212.2 151 69.5
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 2.9e-52 209.9 151 68.9
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 2.9e-52 209.9 151 68.9
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 8.4e-52 208.4 166 62.7
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 4.2e-51 206.1 154 65.6
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 4.2e-51 206.1 144 72.2
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 8.2e-47 191.8 168 58.3
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 1.3e-44 184.5 96 93.8
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 5.0e-44 182.6 96 90.6
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 6.5e-44 182.2 147 58.5
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 1.6e-42 177.6 95 89.5
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 1.0e-41 174.9 96 86.5
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 5.3e-14 82.8 128 39.8
GSVIVG01012590001 Vitis vinifera HOM05D005071 ORTHO05D006069 3.5e-13 80.1 46 73.9
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 6.5e-12 75.9 100 44.0
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.8e-09 67.8 44 75.0
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 3.0e-09 67.0 63 46.0
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 4.0e-09 66.6 114 38.6
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 4.4e-08 63.2 104 40.4
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 8.3e-07 58.9 156 29.5


User provided reference genes

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