Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22317 Selenicereus undatus HOM05D003579 ORTHO05D004266 5.6e-150 534.3 273 100.0
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 3.0e-95 352.4 232 78.4
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 3.0e-95 352.4 222 80.6
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 3.8e-90 335.5 223 76.2
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 6.5e-90 334.7 230 74.8
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 8.5e-90 334.3 224 75.4
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 5.5e-89 331.6 224 75.0
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 7.2e-89 331.3 225 73.3
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 9.4e-89 330.9 223 74.9
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 1.2e-88 330.5 225 73.8
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 1.6e-88 330.1 230 73.0
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 3.6e-88 328.9 246 69.5
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 6.1e-88 328.2 235 71.1
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 1.4e-87 327.0 223 72.2
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 2.3e-87 326.2 247 68.4
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 2.3e-87 326.2 230 72.2
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 4.0e-87 325.5 246 68.3
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 6.8e-87 324.7 230 72.2
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 8.8e-87 324.3 223 74.0
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 1.5e-86 323.6 246 68.3
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 1.5e-86 323.6 246 68.3
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.0e-86 323.2 217 77.4
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 2.6e-86 322.8 217 73.3
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 2.6e-86 322.8 224 73.2
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 3.4e-86 322.4 223 70.9
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 3.4e-86 322.4 232 68.1
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 3.4e-86 322.4 220 74.1
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 4.4e-86 322.0 223 70.9
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 4.4e-86 322.0 223 73.5
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 4.4e-86 322.0 230 73.5
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 5.7e-86 321.6 228 70.6
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 9.8e-86 320.9 229 69.4
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 1.7e-85 320.1 230 71.7
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 2.2e-85 319.7 217 76.5
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 2.8e-85 319.3 229 69.0
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.8e-85 319.3 217 76.0
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 2.8e-85 319.3 247 68.0
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 3.7e-85 318.9 225 70.2
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 3.7e-85 318.9 223 71.7
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 4.8e-85 318.5 223 70.0
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 4.8e-85 318.5 223 70.4
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 4.8e-85 318.5 225 72.0
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 4.8e-85 318.5 247 67.6
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 6.3e-85 318.2 230 68.3
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 6.3e-85 318.2 219 73.5
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 6.3e-85 318.2 220 73.2
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 8.3e-85 317.8 222 71.2
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 8.3e-85 317.8 218 74.3
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 1.1e-84 317.4 218 73.4
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.1e-84 317.4 232 72.0
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 1.1e-84 317.4 230 71.3
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 1.4e-84 317.0 223 69.5
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 1.8e-84 316.6 223 69.5
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 1.8e-84 316.6 228 71.1
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.8e-84 316.6 223 69.1
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 2.4e-84 316.2 231 71.9
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 2.4e-84 316.2 222 72.5
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.4e-84 316.2 225 69.3
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 3.1e-84 315.8 223 69.5
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 3.1e-84 315.8 235 66.8
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 7.0e-84 314.7 228 69.3
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 9.1e-84 314.3 224 70.1
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 9.1e-84 314.3 217 73.7
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 9.1e-84 314.3 230 70.4
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.2e-83 313.9 225 68.9
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 1.2e-83 313.9 221 70.1
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 1.6e-83 313.5 218 72.0
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.6e-83 313.5 223 72.2
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 2.0e-83 313.2 230 69.6
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 2.7e-83 312.8 224 69.2
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 2.7e-83 312.8 222 70.3
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 2.7e-83 312.8 218 72.0
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 2.7e-83 312.8 223 71.3
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 3.5e-83 312.4 224 71.4
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 4.5e-83 312.0 223 71.7
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 4.5e-83 312.0 231 72.3
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 4.5e-83 312.0 224 69.6
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 1.7e-82 310.1 232 66.8
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 2.3e-82 309.7 236 64.8
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 2.9e-82 309.3 230 69.1
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 6.6e-82 308.1 232 68.5
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.1e-81 307.4 224 69.6
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.5e-81 307.0 250 68.0
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 1.9e-81 306.6 222 69.4
Gohir.D07G065501 Gossypium hirsutum HOM05D003579 ORTHO05D004266 2.5e-81 306.2 224 69.2
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 3.3e-81 305.8 220 70.5
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 3.3e-81 305.8 220 70.5
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 5.5e-81 305.1 218 71.6
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 5.5e-81 305.1 222 68.9
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 7.2e-81 304.7 251 62.9
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.2e-80 303.9 213 70.9
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 1.8e-79 300.1 250 62.0
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 5.2e-79 298.5 224 69.2
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 1.2e-78 297.4 217 70.0
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 1.5e-78 297.0 239 65.7
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 2.0e-78 296.6 226 68.6
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 2.6e-78 296.2 232 66.8
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 5.7e-78 295.0 215 69.8
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 5.7e-78 295.0 215 69.8
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 5.7e-78 295.0 222 69.8
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 7.5e-78 294.7 227 66.5
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 3.7e-77 292.4 217 67.7
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 3.7e-77 292.4 217 68.7
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 1.4e-76 290.4 219 68.9
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 7.0e-76 288.1 247 61.1
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 2.9e-74 282.7 217 67.3
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 3.9e-74 282.3 246 60.2
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 6.6e-74 281.6 222 64.9
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 8.6e-74 281.2 194 70.1
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 5.6e-73 278.5 222 64.4
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 2.1e-72 276.6 224 65.2
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 1.2e-70 270.8 219 59.4
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 2.6e-70 269.6 222 62.6
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 3.4e-70 269.2 186 71.5
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 1.3e-69 267.3 258 57.4
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 1.2e-67 260.8 216 62.5
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.7e-66 256.9 217 64.5
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 3.0e-66 256.1 218 58.3
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 3.3e-65 252.7 222 57.2
SEGI_32565 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 3.3e-65 252.7 226 58.4
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.6e-64 250.4 218 59.2
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 8.9e-63 244.6 223 59.2
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 1.2e-62 244.2 219 57.5
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 6.4e-61 238.4 182 68.1
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 1.1e-60 237.7 231 59.3
QL10p037085 Quercus lobata HOM05D003579 ORTHO05D004266 3.5e-59 232.6 163 72.4
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 7.3e-57 224.9 156 69.9
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 1.2e-56 224.2 151 73.5
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 9.9e-54 214.5 156 65.4
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 1.2e-51 207.6 247 49.4
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 2.7e-51 206.5 222 49.1
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 8.6e-50 201.4 199 53.8
Lalb_Chr14g0370481 Lupinus albus HOM05D003579 ORTHO05D004266 1.2e-48 197.6 155 65.8
BolC5t33211H Brassica oleracea HOM05D003579 ORTHO05D004266 1.6e-48 197.2 158 63.9
BraA05t21815Z Brassica rapa HOM05D003579 ORTHO05D004266 6.4e-45 185.3 158 61.4
BraA05t21823Z Brassica rapa HOM05D003579 ORTHO05D004266 1.2e-43 181.0 161 59.6
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 1.5e-41 174.1 149 60.4
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 4.0e-39 166.0 215 44.7
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 2.6e-38 163.3 130 64.6
Oeu016195.1 Olea europaea HOM05D003579 ORTHO05D004266 4.6e-35 152.5 117 69.2
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 5.1e-34 149.1 204 41.2
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 3.7e-24 116.3 211 40.3
arahy.Tifrunner.gnm1.ann1.IG3GCS Arachis hypogaea HOM05D000921 ORTHO05D002852 1.8e-23 114.0 84 64.3
Cfa023793 Carpinus fangiana HOM05D003579 ORTHO05D004266 1.3e-16 91.3 211 31.8
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 4.8e-16 89.4 57 71.9
Sopen09g023790 Solanum pennellii HOM05D003579 ORTHO05D004266 2.1e-11 73.9 60 65.0
Sopen11g021990 Solanum pennellii HOM05D003579 ORTHO05D004266 2.1e-11 73.9 60 65.0
Lsat_1_v5_gn_3_63580 Lactuca sativa HOM05D003579 ORTHO05D004266 6.3e-08 62.4 37 73.0
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 6.3e-08 62.4 39 71.8
Oeu016194.1 Olea europaea HOM05D002938 ORTHO05D002074 6.3e-08 62.4 45 68.9


User provided reference genes

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