Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.6e-169 598.6 291 100.0
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 6.0e-142 507.7 288 87.8
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 3.9e-141 505.0 288 87.8
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.4e-77 293.9 294 54.1
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.4e-66 257.3 295 49.5
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 4.0e-61 239.2 293 47.8
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.8e-54 216.5 251 47.8
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.4e-50 203.4 254 49.2
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 5.4e-50 202.2 309 42.7
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 7.8e-49 198.4 293 41.6
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.7e-48 197.2 289 43.3
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.7e-48 197.2 220 52.7
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 7.3e-47 191.8 283 43.1
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 9.5e-47 191.4 294 39.8
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.2e-46 191.0 217 52.1
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.1e-45 188.0 290 42.8
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 1.4e-45 187.6 223 46.6
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 1.8e-45 187.2 225 46.7
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 1.8e-45 187.2 223 46.6
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.1e-45 186.4 212 52.8
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.1e-45 186.4 212 52.8
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 3.1e-45 186.4 285 42.1
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.5e-44 184.1 264 44.3
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 3.4e-44 183.0 217 50.7
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 4.9e-43 179.1 279 40.9
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 6.4e-43 178.7 222 46.4
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 6.4e-43 178.7 300 39.7
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 8.3e-43 178.3 217 47.5
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 1.1e-42 177.9 235 43.8
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 1.1e-42 177.9 267 41.9
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 3.2e-42 176.4 221 46.2
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 3.2e-42 176.4 297 42.8
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 2.7e-41 173.3 209 50.2
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 6.0e-41 172.2 257 40.5
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 7.8e-41 171.8 210 51.0
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 1.7e-40 170.6 287 41.5
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 2.3e-40 170.2 303 39.6
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 5.1e-40 169.1 203 48.3
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 5.1e-40 169.1 288 39.9
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 6.6e-40 168.7 211 45.0
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 8.6e-40 168.3 290 38.3
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 8.6e-40 168.3 296 39.5
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 8.6e-40 168.3 277 40.1
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 1.1e-39 167.9 211 44.5
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.9e-39 167.2 279 40.1
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 2.5e-39 166.8 275 39.6
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 2.5e-39 166.8 298 40.3
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.3e-39 166.4 211 46.4
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 4.3e-39 166.0 211 46.0
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 5.6e-39 165.6 209 44.5
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 7.3e-39 165.2 252 40.5
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.6e-38 164.1 273 38.5
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 1.6e-38 164.1 264 40.5
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.6e-38 164.1 257 44.7
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 3.6e-38 162.9 243 42.0
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 4.7e-38 162.5 232 43.1
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 8.1e-38 161.8 276 38.0
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 8.1e-38 161.8 278 38.5
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 8.1e-38 161.8 267 39.7
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 8.1e-38 161.8 264 40.5
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.4e-37 161.0 273 38.5
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.4e-37 161.0 251 41.0
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.8e-37 160.6 251 43.0
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 4.0e-37 159.5 297 38.0
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.0e-37 159.5 255 40.0
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.0e-37 159.5 267 39.7
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 6.8e-37 158.7 295 39.0
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 6.8e-37 158.7 252 39.7
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.8e-37 158.7 269 39.0
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 6.8e-37 158.7 211 46.9
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 8.9e-37 158.3 213 45.5
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 3.4e-36 156.4 235 40.9
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 5.8e-36 155.6 255 39.6
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 9.9e-36 154.8 210 43.3
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 2.2e-35 153.7 218 44.5
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 2.2e-35 153.7 218 44.5
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 4.9e-35 152.5 211 43.6
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 4.9e-35 152.5 210 44.3
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 6.4e-35 152.1 191 47.1
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 6.4e-35 152.1 242 41.3
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.1e-34 151.4 279 36.6
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 1.1e-34 151.4 252 39.7
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 3.2e-34 149.8 209 44.0
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 5.4e-34 149.1 279 36.6
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 7.1e-34 148.7 264 37.9
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 9.3e-34 148.3 279 37.6
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 9.3e-34 148.3 265 37.4
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 9.3e-34 148.3 248 38.7
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 1.2e-33 147.9 202 46.0
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 7.8e-33 145.2 158 48.7
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 7.8e-33 145.2 224 42.0
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 2.3e-32 143.7 202 45.0
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 3.9e-32 142.9 218 44.0
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 5.1e-32 142.5 218 44.0
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 5.1e-32 142.5 218 44.0
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 5.1e-32 142.5 251 39.8
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.1e-31 141.4 296 34.1
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 1.5e-31 141.0 204 42.6
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.5e-31 140.2 186 44.6
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 4.3e-31 139.4 230 40.4
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 5.6e-31 139.0 285 35.8
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 9.6e-31 138.3 230 40.0
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.6e-30 137.5 207 42.5
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 2.1e-30 137.1 204 42.6
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 3.6e-30 136.3 220 41.4
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 1.1e-29 134.8 203 41.4
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 1.8e-29 134.0 204 41.7
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.8e-29 134.0 204 42.6
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.8e-29 134.0 204 41.7
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 2.4e-29 133.7 195 46.2
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 6.9e-29 132.1 210 41.0
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 2.6e-28 130.2 211 41.7
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 4.4e-28 129.4 256 35.2
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.9e-28 128.3 206 40.8
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.9e-28 128.3 206 40.8
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.4e-26 124.4 204 39.2
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.9e-26 124.0 225 37.3
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 2.7e-25 120.2 319 32.0
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 3.5e-25 119.8 181 42.5
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.0e-24 116.7 122 53.3
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.9e-23 114.0 211 36.5
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.9e-23 114.0 215 39.5
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.5e-23 113.6 211 37.4
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.5e-23 113.6 211 36.5
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 4.3e-23 112.8 183 38.8
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 4.3e-23 112.8 183 38.8
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 4.8e-22 109.4 162 43.2
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 8.1e-22 108.6 229 34.9
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.5e-20 104.4 131 48.1
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.2e-18 96.7 176 38.1
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.8e-16 90.9 181 35.9
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.8e-16 90.9 173 37.0
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 2.3e-16 90.5 175 38.3
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 3.9e-16 89.7 101 48.5
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 6.7e-16 89.0 68 69.1
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 3.3e-15 86.7 164 37.2
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 3.3e-15 86.7 212 34.0
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.1e-13 81.6 112 44.6
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 9.0e-13 78.6 121 40.5
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 4.6e-09 66.2 67 61.2
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 8.7e-08 62.0 117 39.3
QL04p046243 Quercus lobata HOM05D003594 ORTHO05D026973 3.3e-07 60.1 93 44.1
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 8.2e-06 55.5 95 41.1


User provided reference genes

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