Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.6e-203 712.6 372 100.0
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 2.2e-104 383.3 372 59.7
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 6.4e-104 381.7 372 60.8
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.0e-101 374.4 372 58.9
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 7.5e-97 358.2 372 57.0
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 1.3e-93 347.4 372 57.3
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.1e-91 340.1 377 56.2
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 2.8e-91 339.7 381 56.7
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.4e-90 337.4 375 55.7
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.3e-88 330.9 373 55.8
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 4.9e-88 328.9 372 56.2
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.1e-87 327.8 375 54.9
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.2e-86 324.3 358 55.6
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 1.6e-86 323.9 377 54.4
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.6e-86 323.9 353 56.9
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 2.7e-86 323.2 373 55.5
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 3.5e-86 322.8 341 58.1
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 4.6e-86 322.4 353 56.7
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.0e-85 321.2 341 57.5
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.3e-85 320.9 328 58.8
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 1.3e-85 320.9 356 55.9
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.9e-85 319.3 376 53.5
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 8.6e-85 318.2 373 54.4
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 1.5e-84 317.4 357 55.7
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 9.5e-84 314.7 360 55.0
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 4.7e-83 312.4 372 53.5
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 4.7e-83 312.4 355 55.2
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 6.2e-83 312.0 360 54.4
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 8.1e-83 311.6 373 54.7
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 3.1e-82 309.7 372 54.0
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 3.1e-82 309.7 372 54.0
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 3.1e-82 309.7 342 56.4
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 4.0e-82 309.3 362 54.1
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 8.9e-82 308.1 344 55.5
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.2e-81 307.8 375 52.5
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.5e-81 307.4 331 56.5
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.0e-81 307.0 341 55.7
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 2.6e-81 306.6 361 53.7
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 3.4e-81 306.2 355 54.4
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 7.6e-81 305.1 345 54.8
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 2.2e-80 303.5 376 53.2
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.4e-79 300.1 375 52.3
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 5.4e-79 298.9 376 51.1
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.4e-79 298.9 372 52.2
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 9.2e-79 298.1 334 53.3
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 1.2e-78 297.7 345 54.8
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.6e-78 297.4 375 52.0
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.6e-78 297.4 372 51.9
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 2.1e-78 297.0 356 52.5
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.1e-78 297.0 372 51.6
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 4.6e-78 295.8 384 51.6
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.6e-78 295.8 372 51.6
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.3e-77 294.3 377 50.1
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 1.3e-77 294.3 372 51.3
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 1.7e-77 293.9 373 50.1
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 3.9e-77 292.7 355 52.4
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 1.1e-76 291.2 347 53.3
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 2.5e-76 290.0 338 53.3
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 2.5e-76 290.0 357 52.4
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 2.5e-76 290.0 359 52.1
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 2.5e-76 290.0 377 52.5
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 4.3e-76 289.3 356 51.1
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 4.3e-76 289.3 358 51.4
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 5.6e-76 288.9 373 50.1
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 5.6e-76 288.9 373 50.1
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.2e-75 287.7 408 48.3
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.6e-75 287.3 356 50.8
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 1.6e-75 287.3 373 49.9
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 1.6e-75 287.3 356 50.8
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.6e-75 287.3 377 50.4
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 2.1e-75 287.0 380 49.5
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 3.6e-75 286.2 353 51.6
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.1e-74 284.6 379 50.1
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 1.1e-74 284.6 375 50.9
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 9.0e-74 281.6 338 52.7
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 9.0e-74 281.6 327 52.0
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.6e-73 280.0 335 51.6
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 5.8e-73 278.9 327 49.8
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 5.8e-73 278.9 375 50.1
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 1.3e-72 277.7 379 49.6
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 4.9e-72 275.8 356 50.0
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 8.4e-72 275.0 334 50.0
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 8.4e-72 275.0 464 42.9
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 2.4e-71 273.5 356 49.4
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 3.2e-71 273.1 381 49.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 3.2e-71 273.1 327 50.8
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 5.4e-71 272.3 356 49.4
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 9.3e-71 271.6 427 44.5
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 9.3e-71 271.6 372 48.9
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 2.1e-70 270.4 327 50.2
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 6.0e-70 268.9 379 49.1
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.1e-68 264.6 289 56.7
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.1e-68 264.6 371 47.4
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 1.1e-68 264.6 385 47.0
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 5.6e-68 262.3 332 50.6
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 7.3e-68 261.9 332 51.5
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 8.1e-67 258.5 358 49.4
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 2.4e-66 256.9 360 46.9
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 4.0e-66 256.1 360 46.9
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 7.6e-65 251.9 470 41.5
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 5.4e-63 245.7 379 47.2
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 1.9e-60 237.3 297 51.5
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 7.4e-60 235.3 250 59.6
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 2.8e-59 233.4 377 45.4
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 6.2e-59 232.3 314 50.0
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 9.0e-58 228.4 332 47.0
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.2e-57 228.0 329 43.8
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 3.0e-53 213.4 198 65.2
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 6.7e-53 212.2 357 43.7
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 8.7e-53 211.8 290 48.3
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 6.5e-48 195.7 249 50.6
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 9.3e-47 191.8 384 41.7
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 1.3e-45 188.0 139 77.0
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 4.8e-43 179.5 258 46.1
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 5.9e-41 172.6 346 38.2
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 6.5e-40 169.1 315 36.8
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 8.5e-40 168.7 315 36.8
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.2e-38 164.9 159 63.5
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 4.6e-38 162.9 321 35.8
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 2.5e-36 157.1 296 35.5
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.8e-32 143.3 312 31.7
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 9.4e-31 138.7 225 40.0
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.6e-30 137.9 194 49.5
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.3e-27 128.3 98 71.4
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 4.8e-27 126.3 306 33.3
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 1.1e-26 125.2 137 54.7
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 2.6e-25 120.6 111 63.1
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.9e-24 117.1 285 29.1
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 1.4e-21 108.2 146 41.8
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.8e-21 107.8 158 46.8
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 4.5e-17 93.2 152 40.1
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 5.9e-17 92.8 250 30.8
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.0e-16 92.0 133 40.6
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 2.9e-16 90.5 133 39.8
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.2e-15 87.0 88 59.1
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 5.5e-15 86.3 133 39.1
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 2.0e-09 67.8 54 57.4
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.7e-08 64.7 90 41.1
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 2.2e-08 64.3 55 54.5
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 2.2e-08 64.3 55 54.5
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 2.2e-08 64.3 55 54.5


User provided reference genes

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