Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 7.8e-239 830.1 431 100.0
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 9.2e-155 550.8 431 69.8
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 3.5e-154 548.9 435 69.7
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 3.9e-153 545.4 434 68.9
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.1e-152 543.9 437 68.9
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 1.1e-144 517.3 385 68.3
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 4.3e-144 515.4 355 72.4
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 8.0e-143 511.1 359 71.0
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 8.0e-143 511.1 355 72.4
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.4e-142 510.4 347 73.8
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 1.4e-142 510.4 375 68.5
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 4.0e-142 508.8 347 73.5
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.7e-140 503.4 360 70.6
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 1.9e-139 500.0 403 64.5
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 3.2e-139 499.2 431 63.3
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 5.4e-139 498.4 346 73.4
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 1.2e-138 497.3 428 63.3
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 2.7e-138 496.1 362 69.3
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 2.7e-138 496.1 363 69.4
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 4.6e-138 495.4 356 71.1
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 1.3e-137 493.8 432 62.5
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 1.7e-137 493.4 359 69.6
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 3.9e-137 492.3 359 69.4
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 5.1e-137 491.9 375 68.0
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 8.6e-137 491.1 354 71.5
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 1.9e-136 490.0 372 67.7
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 4.3e-136 488.8 432 62.0
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 1.2e-135 487.3 450 60.4
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 1.6e-135 486.9 405 65.2
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 2.1e-135 486.5 366 68.0
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 3.6e-135 485.7 364 70.3
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 3.6e-135 485.7 361 67.6
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 4.7e-135 485.3 427 63.7
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 6.2e-135 485.0 380 67.9
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 6.2e-135 485.0 307 77.2
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 8.1e-135 484.6 296 80.4
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.4e-134 483.8 404 63.4
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 1.8e-134 483.4 376 68.4
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 1.8e-134 483.4 326 73.0
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 1.8e-134 483.4 295 78.3
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 2.3e-134 483.0 376 66.2
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 3.1e-134 482.6 384 67.7
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 6.8e-134 481.5 378 67.7
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 6.8e-134 481.5 377 67.1
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 8.9e-134 481.1 367 68.1
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 8.9e-134 481.1 364 67.9
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.2e-133 480.7 406 64.3
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 1.5e-133 480.3 361 67.9
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 2.0e-133 479.9 374 68.2
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 2.0e-133 479.9 414 62.8
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 3.4e-133 479.2 354 71.5
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 4.4e-133 478.8 347 70.0
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 5.8e-133 478.4 379 67.5
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 7.5e-133 478.0 428 60.7
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 9.9e-133 477.6 348 68.1
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 3.7e-132 475.7 404 63.9
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 1.9e-131 473.4 424 59.4
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 2.4e-131 473.0 315 74.0
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 5.4e-131 471.9 371 66.0
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 1.2e-130 470.7 340 73.5
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 2.1e-130 469.9 428 62.6
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 3.9e-129 465.7 343 68.2
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 6.6e-129 464.9 344 69.5
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 8.6e-129 464.5 306 76.1
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 1.1e-128 464.2 295 76.9
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 1.1e-128 464.2 382 62.0
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 7.3e-128 461.5 378 64.6
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 6.2e-127 458.4 348 65.2
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 8.1e-127 458.0 366 64.5
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 1.1e-126 457.6 365 64.9
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 1.1e-126 457.6 378 64.6
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 6.8e-126 454.9 402 61.7
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.2e-125 454.1 377 62.6
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.8e-125 451.8 445 56.0
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 9.9e-125 451.1 330 69.1
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 3.8e-124 449.1 409 59.2
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 6.4e-124 448.4 432 58.3
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 4.2e-123 445.7 342 66.7
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 7.1e-123 444.9 371 63.1
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 7.1e-123 444.9 279 77.4
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 9.2e-123 444.5 288 76.7
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 3.0e-121 439.5 279 78.1
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 1.6e-119 433.7 358 64.2
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.9e-115 420.2 388 57.0
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 2.4e-115 419.9 245 86.1
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 7.1e-115 418.3 508 47.8
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.2e-114 417.5 351 64.1
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.3e-113 414.1 261 78.9
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 4.8e-111 405.6 364 59.6
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.9e-104 383.6 476 47.3
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 3.3e-104 382.9 300 64.7
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 5.6e-104 382.1 364 59.3
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 8.1e-103 378.3 474 50.2
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 7.6e-101 371.7 360 57.2
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 3.8e-100 369.4 390 54.6
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 2.5e-99 366.7 291 64.3
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 1.5e-96 357.5 317 60.9
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 1.0e-89 334.7 258 67.4
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 1.5e-88 330.9 255 66.3
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 1.6e-87 327.4 246 67.1
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 1.8e-86 323.9 273 63.4
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.2e-85 321.2 283 60.8
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.0e-81 308.1 323 48.9
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 2.0e-80 303.9 360 50.6
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.8e-79 300.1 277 58.5
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 1.4e-78 297.7 293 57.3
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 5.5e-75 285.8 202 70.8
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.9e-67 260.8 161 77.6
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 3.2e-67 260.0 158 75.9
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 1.1e-59 235.0 216 62.0
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 3.2e-59 233.4 156 71.8
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 3.4e-56 223.4 199 60.3
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 1.6e-45 188.0 183 56.3
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 3.7e-31 140.2 114 61.4
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 1.2e-29 135.2 122 57.4
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 5.6e-27 126.3 136 54.4
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 1.2e-26 125.2 96 65.6
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 8.9e-25 119.0 110 55.5
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 1.1e-19 102.1 92 58.7
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 6.8e-17 92.8 104 47.1
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 2.2e-15 87.8 256 28.9
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 7.1e-14 82.8 159 44.0
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 2.1e-10 71.2 35 88.6
Pp3s42_60 Physcomitrium patens HOM05D000182 ORTHO05D011688 8.9e-09 65.9 264 26.5
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 2.6e-08 64.3 70 51.4


User provided reference genes

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