Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 0.0e+00 1335.1 676 100.0
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 7.4e-260 900.6 733 65.1
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 8.2e-251 870.5 731 62.2
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 3.5e-241 838.6 733 59.8
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.6e-236 822.4 731 58.8
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.6e-233 813.1 735 57.4
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 3.8e-232 808.5 732 58.1
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 2.5e-231 805.8 742 58.2
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 5.5e-231 804.7 732 57.8
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 9.4e-231 803.9 737 57.5
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 3.0e-229 798.9 707 59.7
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 5.7e-228 794.7 732 57.5
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 4.8e-227 791.6 733 57.7
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 8.3e-227 790.8 740 57.3
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 8.3e-227 790.8 740 57.4
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.3e-224 783.5 734 57.4
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 6.5e-224 781.2 735 56.2
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 9.4e-223 777.3 735 55.9
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 6.1e-222 774.6 740 56.2
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 8.0e-222 774.2 738 56.5
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 8.0e-222 774.2 732 56.0
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 1.0e-221 773.9 728 56.2
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.2e-220 770.4 734 55.4
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 3.4e-220 768.8 733 55.4
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 3.4e-220 768.8 734 55.2
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 1.7e-219 766.5 735 55.2
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 2.2e-219 766.1 756 56.0
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 2.8e-219 765.8 736 55.0
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.7e-219 765.4 732 54.8
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.7e-219 765.4 732 54.8
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.4e-218 762.7 732 54.6
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 5.4e-218 761.5 734 55.0
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 9.1e-218 760.8 731 54.2
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.2e-217 760.4 734 56.1
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.2e-217 760.4 731 56.2
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 4.5e-217 758.4 731 54.3
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 5.9e-217 758.1 733 55.3
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.0e-216 757.3 732 54.4
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.3e-216 756.9 734 55.9
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 1.7e-216 756.5 732 55.2
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.7e-216 756.5 731 54.9
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 2.3e-216 756.1 731 54.6
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 8.6e-216 754.2 732 55.2
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 5.5e-215 751.5 731 55.3
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 7.2e-215 751.1 734 54.0
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 2.1e-214 749.6 734 54.2
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 2.8e-214 749.2 769 53.2
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 1.4e-213 746.9 735 53.9
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 4.0e-213 745.3 750 54.1
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 4.0e-213 745.3 735 54.0
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 4.0e-213 745.3 735 55.0
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 6.8e-213 744.6 731 53.8
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 1.5e-212 743.4 731 54.7
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 3.4e-212 742.3 731 54.6
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 4.4e-212 741.9 731 54.4
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 2.2e-211 739.6 734 53.8
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 2.8e-211 739.2 740 54.5
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 2.8e-211 739.2 765 52.9
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 4.9e-211 738.4 732 54.0
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.1e-210 737.3 796 51.4
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.8e-210 736.5 731 54.0
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 7.8e-209 731.1 732 53.3
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.3e-208 730.3 732 53.1
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 8.6e-208 727.6 767 54.8
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 1.2e-206 723.8 731 52.8
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 4.7e-206 721.8 734 54.4
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.5e-204 716.8 708 56.5
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 9.8e-204 714.1 731 51.8
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 6.4e-203 711.4 732 52.0
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 3.6e-198 695.7 712 52.4
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 4.0e-197 692.2 676 54.6
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 2.2e-195 686.4 724 52.5
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 5.4e-194 681.8 711 51.8
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 9.2e-194 681.0 697 53.2
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 2.3e-192 676.4 661 55.1
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 2.8e-190 669.5 737 50.2
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 3.2e-178 629.4 687 49.8
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 4.6e-177 625.5 723 49.1
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 8.7e-176 621.3 648 53.4
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.9e-175 620.2 611 53.5
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 7.3e-175 618.2 606 54.0
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 6.2e-174 615.1 592 55.1
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 1.1e-173 614.4 739 45.6
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 2.2e-171 606.7 609 53.0
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 2.2e-171 606.7 737 46.7
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.3e-168 597.4 502 60.2
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 1.7e-168 597.0 611 51.7
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.5e-167 594.0 498 59.6
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 4.5e-164 582.4 610 51.6
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.7e-163 580.5 820 44.8
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 3.8e-163 579.3 710 45.1
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 5.3e-157 558.9 711 46.6
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 1.2e-148 531.2 639 47.1
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 4.5e-148 529.3 606 46.5
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.5e-148 529.3 468 56.6
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 5.0e-147 525.8 497 55.3
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.5e-140 504.2 395 61.0
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 9.1e-125 451.8 423 56.3
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 5.7e-119 432.6 747 38.2
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 1.4e-117 427.9 746 37.9
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 1.2e-111 408.3 606 41.3
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 8.0e-97 359.0 453 45.3
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 2.3e-96 357.5 379 50.1
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.3e-94 351.7 445 47.4
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.3e-90 337.0 586 36.5
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 5.6e-90 336.3 846 30.9
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 6.8e-88 329.3 348 50.9
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.9e-86 323.9 444 41.9
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.6e-83 312.8 437 41.9
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.1e-82 312.0 230 63.5
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.1e-81 307.8 518 36.5
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.4e-72 278.5 294 49.3
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.7e-60 237.7 187 62.0
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.3e-49 202.2 233 50.2
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.8e-48 198.4 126 71.4
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 2.2e-46 191.4 381 36.5
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 9.3e-45 186.0 237 45.6
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 4.6e-44 183.7 113 69.0
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.8e-43 181.8 126 68.3
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 1.6e-41 175.3 159 52.8
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 9.3e-37 159.5 187 43.3
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 8.5e-30 136.3 169 46.7
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.2e-29 134.0 91 71.4
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 5.5e-29 133.7 95 68.4
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.3e-25 120.2 144 47.9
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 3.4e-23 114.4 135 45.2
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.6e-20 104.4 69 59.4
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 7.9e-20 103.2 76 65.8
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 4.4e-18 97.4 214 35.0
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.7e-18 97.1 145 46.2
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 2.2e-17 95.1 110 47.3
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 2.2e-14 85.1 90 54.4
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 5.2e-11 73.9 44 72.7
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 6.7e-11 73.6 44 70.5
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 3.7e-09 67.8 60 55.0
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 8.2e-09 66.6 98 40.8
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 2.4e-08 65.1 84 38.1


User provided reference genes

Program Settings