Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 3.6e-136 488.4 277 100.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 90.6
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 3.5e-123 445.3 277 89.5
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 89.9
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 89.2
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 89.2
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 89.2
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.3e-122 443.4 277 88.4
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.8
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.4
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.8
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 89.2
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 89.5
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 88.4
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.0e-122 442.2 277 88.4
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 88.8
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 88.8
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 88.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 88.1
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 88.4
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 89.5
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 88.4
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.5e-121 439.9 278 89.2
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 87.7
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 88.1
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 87.7
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 87.0
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 3.6e-120 435.3 276 88.0
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 87.0
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 6.2e-120 434.5 277 86.3
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 87.4
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 87.0
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 87.0
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 87.0
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.0e-119 433.7 277 86.6
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.4e-119 433.3 277 85.9
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 85.6
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 85.9
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 3.1e-119 432.2 277 87.4
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 86.3
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 8.9e-119 430.6 277 85.6
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.5e-118 429.9 277 86.3
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 2.0e-118 429.5 275 87.6
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 86.3
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 86.3
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 7.5e-118 427.6 277 85.6
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 84.8
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 85.6
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 85.6
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 87.0
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 85.6
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 6.4e-117 424.5 275 85.8
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 8.3e-117 424.1 277 84.1
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.9e-116 422.9 277 83.8
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.9e-116 422.9 277 84.1
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.9e-116 422.9 277 85.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 5.4e-116 421.4 275 83.6
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 7.0e-116 421.0 274 83.9
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 7.0e-116 421.0 277 85.9
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.6e-115 419.9 277 83.0
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.6e-115 419.9 277 83.8
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 2.7e-115 419.1 274 83.6
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 3.5e-115 418.7 277 84.8
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 6.0e-115 417.9 283 82.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 6.0e-115 417.9 321 75.7
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 7.8e-115 417.5 277 83.0
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 2.3e-114 416.0 261 88.9
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.0e-114 415.6 274 87.2
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.1e-113 413.7 301 78.4
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 7.3e-113 411.0 275 82.9
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 7.3e-113 411.0 275 82.9
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.2e-112 410.2 277 84.1
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.6e-112 409.8 270 86.7
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 2.8e-112 409.1 277 79.1
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 2.8e-112 409.1 277 84.8
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.2e-112 407.9 277 83.4
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.1e-112 407.5 261 86.2
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.1e-112 407.5 261 86.2
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 2.3e-111 406.0 273 82.8
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.2e-111 404.8 320 74.1
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 5.8e-110 401.4 280 82.1
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 9.8e-110 400.6 318 72.6
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.7e-109 398.7 269 80.3
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 1.4e-108 396.7 275 81.1
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.2e-108 395.6 275 80.7
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 7.1e-108 394.4 277 80.1
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 7.1e-108 394.4 278 80.2
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 6.0e-107 391.3 264 84.5
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 7.8e-107 391.0 273 79.9
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.0e-106 390.6 278 78.8
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.3e-106 390.2 299 71.9
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 5.1e-106 388.3 317 68.1
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 6.6e-106 387.9 278 79.1
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 8.6e-106 387.5 255 86.3
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.3e-105 385.6 278 77.3
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 6.2e-104 381.3 277 78.7
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 8.1e-104 380.9 274 73.4
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 8.9e-103 377.5 260 81.9
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 8.9e-103 377.5 256 80.5
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 2.0e-102 376.3 256 83.2
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 4.4e-102 375.2 275 78.2
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 4.4e-102 375.2 262 80.5
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.8e-102 374.8 353 61.8
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 2.9e-101 372.5 271 78.6
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 7.8e-99 364.4 331 68.6
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.5e-97 359.4 230 85.2
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 3.1e-95 352.4 230 85.2
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 6.4e-93 344.7 222 88.3
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 4.2e-92 342.0 222 86.9
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 6.6e-90 334.7 278 65.1
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 1.9e-89 333.2 268 71.3
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.5e-89 332.8 250 77.2
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.5e-89 332.8 250 77.2
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 4.0e-87 325.5 277 66.8
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 7.6e-86 321.2 274 64.6
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.3e-85 320.5 319 63.6
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 4.9e-85 318.5 282 65.6
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 4.9e-85 318.5 284 66.2
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 6.4e-85 318.2 224 81.2
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-82 310.8 274 67.9
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.1e-81 307.4 274 67.5
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.7e-69 266.9 258 58.9
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 6.5e-69 265.0 187 80.2
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 8.7e-66 254.6 278 56.8
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.5e-65 253.1 287 52.6
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 4.3e-57 225.7 181 76.8
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 8.2e-56 221.5 153 75.2
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 6.9e-55 218.4 138 81.9
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 4.5e-54 215.7 145 84.1
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.1e-52 211.1 129 85.3
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.0e-50 204.5 132 79.5
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.0e-46 190.3 300 45.0
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 2.3e-42 176.8 97 91.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 3.9e-42 176.0 106 84.9
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 8.2e-40 168.3 90 92.2
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.3e-34 150.2 84 86.9
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 7.5e-33 145.2 154 56.5
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.6e-30 137.5 90 77.8
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.8e-29 132.9 74 89.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.8e-29 132.9 74 89.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.8e-29 132.9 80 81.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.3e-21 107.8 259 36.7
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 5.0e-21 105.9 158 47.5
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 4.7e-19 99.4 158 44.3
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-18 97.8 147 46.3
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 3.0e-18 96.7 150 39.3
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 6.8e-18 95.5 57 80.7
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.4e-17 93.2 156 38.5
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.7e-17 92.4 71 85.9
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 9.8e-17 91.7 179 37.4
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 1.7e-16 90.9 158 43.0
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 8.3e-16 88.6 73 71.2
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-15 87.4 71 78.9
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.9e-14 82.4 175 33.7
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.9e-14 82.4 46 89.1
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-12 77.8 46 82.6
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 2.5e-12 77.0 46 80.4
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.3e-12 75.5 157 40.1
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.2e-11 74.7 162 36.4
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 4.7e-11 72.8 43 81.4
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.6e-09 67.0 264 30.7
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.9e-08 63.5 145 40.0
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 1.6e-06 57.8 60 55.0


User provided reference genes

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