Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 5.5e-198 694.1 351 100.0
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 5.0e-151 538.1 363 74.9
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 5.7e-147 524.6 364 72.8
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 2.0e-144 516.2 368 71.7
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.4e-132 476.9 370 65.4
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 7.5e-131 471.1 353 66.9
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 9.8e-131 470.7 359 66.3
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 2.2e-130 469.5 336 70.8
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 4.1e-129 465.3 342 67.5
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 5.4e-129 464.9 358 65.6
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 9.2e-129 464.2 350 67.4
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 9.2e-129 464.2 350 67.4
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 2.7e-128 462.6 350 67.1
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 2.7e-128 462.6 351 65.5
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 6.0e-128 461.5 360 65.6
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 3.9e-127 458.8 360 66.4
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 1.5e-126 456.8 350 66.3
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 1.9e-126 456.4 366 64.5
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 2.5e-126 456.1 369 64.5
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 3.3e-126 455.7 366 64.8
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 4.3e-126 455.3 353 66.3
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 4.3e-126 455.3 358 65.6
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.6e-125 453.4 339 67.3
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 2.1e-125 453.0 356 65.2
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 2.1e-125 453.0 325 68.3
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 2.8e-125 452.6 371 63.3
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.8e-125 452.6 358 66.5
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 3.6e-125 452.2 371 63.3
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 3.6e-125 452.2 360 64.7
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.6e-125 452.2 367 64.3
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 6.2e-125 451.4 347 66.3
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 6.2e-125 451.4 362 64.9
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 6.2e-125 451.4 339 66.1
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 1.1e-124 450.7 341 67.2
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.1e-124 450.7 363 64.2
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 2.3e-124 449.5 358 65.4
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 4.0e-124 448.7 353 63.5
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 5.2e-124 448.4 357 65.3
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 5.2e-124 448.4 372 62.6
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 1.2e-123 447.2 356 65.2
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 2.0e-123 446.4 358 64.5
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 2.0e-123 446.4 354 65.5
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 3.4e-123 445.7 365 63.3
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 4.4e-123 445.3 338 66.6
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 4.4e-123 445.3 366 63.4
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 4.4e-123 445.3 368 64.1
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 5.8e-123 444.9 367 63.2
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 5.8e-123 444.9 339 67.3
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 7.5e-123 444.5 323 69.7
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 7.5e-123 444.5 360 62.8
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 9.8e-123 444.1 368 63.3
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.3e-122 443.7 368 62.5
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.3e-122 443.7 322 68.3
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 2.2e-122 443.0 325 67.7
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.9e-122 442.6 378 63.5
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 3.7e-122 442.2 331 67.7
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 3.7e-122 442.2 361 64.0
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 4.9e-122 441.8 323 67.5
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.1e-121 440.7 342 64.9
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.1e-121 440.7 378 62.4
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.1e-121 440.7 383 62.9
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.9e-121 439.9 344 65.7
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.9e-121 439.9 367 61.6
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 4.1e-121 438.7 370 60.8
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 4.1e-121 438.7 369 61.8
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 9.2e-121 437.6 358 63.1
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 9.2e-121 437.6 381 59.8
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 1.6e-120 436.8 361 64.3
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 1.6e-120 436.8 355 63.9
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 4.6e-120 435.3 364 62.4
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 6.0e-120 434.9 355 63.1
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 7.8e-120 434.5 355 63.9
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 7.8e-120 434.5 361 63.4
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.3e-119 433.7 330 65.5
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 3.0e-119 432.6 369 62.3
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 3.9e-119 432.2 326 66.3
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 5.1e-119 431.8 357 62.5
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 5.1e-119 431.8 360 63.3
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 6.6e-119 431.4 357 62.2
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 6.6e-119 431.4 357 62.2
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 6.6e-119 431.4 353 64.0
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 8.6e-119 431.0 351 62.1
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 1.1e-118 430.6 359 62.1
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 1.9e-118 429.9 368 61.1
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.5e-118 429.5 336 64.9
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.3e-118 428.7 339 66.4
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 2.1e-117 426.4 361 62.0
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 6.2e-117 424.9 361 62.0
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 1.1e-116 424.1 358 62.0
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.4e-116 423.7 351 64.4
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 3.1e-116 422.5 339 64.3
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.1e-116 422.5 311 68.5
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 3.1e-116 422.5 334 65.0
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 1.2e-115 420.6 359 60.4
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 3.4e-115 419.1 321 65.7
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 7.6e-115 417.9 338 64.8
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 1.7e-114 416.8 385 57.7
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.2e-114 416.4 284 72.2
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 4.9e-114 415.2 334 63.5
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.5e-112 409.1 358 60.3
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 1.3e-111 407.1 354 59.6
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.0e-111 406.0 311 64.3
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 3.0e-111 406.0 352 60.8
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 1.5e-110 403.7 368 58.2
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.2e-109 400.6 343 60.9
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 2.8e-109 399.4 362 58.6
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 4.0e-108 395.6 323 62.5
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 8.9e-108 394.4 357 58.5
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 8.9e-108 394.4 357 58.5
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 2.0e-107 393.3 358 57.5
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 2.6e-107 392.9 358 57.8
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 4.4e-107 392.1 358 57.0
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 7.6e-107 391.3 357 58.0
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 3.8e-106 389.0 356 58.1
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 3.8e-106 389.0 357 57.7
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 4.9e-106 388.7 358 55.9
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 1.1e-105 387.5 351 57.3
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 3.2e-105 386.0 358 57.0
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 1.6e-104 383.6 359 56.5
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 2.7e-104 382.9 346 56.9
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 7.8e-104 381.3 359 56.8
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 1.3e-103 380.6 349 59.0
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 3.0e-103 379.4 337 58.5
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 2.5e-102 376.3 355 56.3
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 2.5e-102 376.3 355 56.3
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 4.3e-102 375.6 355 56.3
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 6.2e-101 371.7 355 56.1
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 1.8e-100 370.2 332 58.7
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 2.4e-100 369.8 361 54.6
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 4.0e-100 369.0 360 55.6
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.2e-98 363.2 282 66.0
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 4.9e-98 362.1 338 55.3
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 8.1e-93 344.7 456 44.5
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 2.0e-91 340.1 314 59.2
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 3.4e-91 339.3 276 64.5
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 2.9e-90 336.3 355 52.4
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 1.1e-89 334.3 272 61.4
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.1e-86 324.3 198 82.3
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 6.2e-85 318.5 255 61.2
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 6.2e-85 318.5 328 50.6
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 3.8e-82 309.3 360 50.8
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.4e-81 307.4 360 47.8
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.0e-79 301.2 292 52.4
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 5.3e-76 288.9 364 46.2
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 6.5e-74 282.0 225 63.1
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.3e-69 267.7 224 60.7
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 6.3e-69 265.4 194 67.0
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.7e-66 257.3 221 62.0
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.1e-65 254.6 219 58.9
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 4.2e-65 252.7 305 43.9
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 9.4e-65 251.5 268 51.5
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 8.8e-63 245.0 212 57.5
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 5.5e-57 225.7 166 68.1
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 9.1e-52 208.4 164 63.4
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 6.7e-47 192.2 138 70.3
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 3.1e-44 183.3 127 72.4
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 1.7e-42 177.6 137 67.9
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 1.5e-33 147.9 108 66.7
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 9.4e-33 145.2 103 68.9
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 2.8e-24 117.1 270 29.3
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 6.1e-24 115.9 84 59.5
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 1.0e-15 88.6 313 25.9


User provided reference genes

Program Settings