Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 2.7e-58 228.4 113 100.0
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.6e-42 176.0 113 78.8
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 4.7e-42 174.5 113 79.6
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.4e-41 172.9 113 78.8
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 2.6e-40 168.7 118 76.3
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 4.1e-38 161.4 113 73.5
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.2e-37 159.8 113 69.9
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.2e-37 159.8 113 69.9
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 1.6e-37 159.5 113 71.7
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 3.5e-37 158.3 113 69.9
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 4.5e-37 157.9 113 69.9
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 4.5e-37 157.9 113 69.9
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 4.5e-37 157.9 113 69.0
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 5.9e-37 157.5 113 69.0
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 5.9e-37 157.5 113 69.9
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 5.9e-37 157.5 109 71.6
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 5.9e-37 157.5 113 69.0
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 7.7e-37 157.1 113 69.9
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 7.7e-37 157.1 113 68.1
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 1.0e-36 156.8 113 69.9
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 1.0e-36 156.8 111 68.5
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.3e-36 156.4 113 68.1
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 1.3e-36 156.4 113 67.3
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 1.7e-36 156.0 113 69.0
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 1.7e-36 156.0 113 69.0
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 2.2e-36 155.6 107 72.9
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 2.9e-36 155.2 113 65.5
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 3.8e-36 154.8 113 68.1
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 3.8e-36 154.8 113 67.3
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 5.0e-36 154.5 113 68.1
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 5.0e-36 154.5 113 67.3
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 5.0e-36 154.5 113 67.3
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 5.0e-36 154.5 113 66.4
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 5.0e-36 154.5 113 69.0
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 6.5e-36 154.1 113 69.0
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 8.5e-36 153.7 113 67.3
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 1.1e-35 153.3 111 65.8
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.1e-35 153.3 107 68.2
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.5e-35 152.9 113 66.4
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 1.5e-35 152.9 113 68.1
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 1.5e-35 152.9 113 66.4
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 2.5e-35 152.1 113 68.1
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 2.5e-35 152.1 107 72.0
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 2.5e-35 152.1 113 65.5
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 2.5e-35 152.1 113 65.5
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 3.2e-35 151.8 113 67.3
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 3.2e-35 151.8 113 65.5
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 3.2e-35 151.8 113 69.0
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 3.2e-35 151.8 113 63.7
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 5.5e-35 151.0 113 67.3
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 5.5e-35 151.0 113 64.6
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 5.5e-35 151.0 105 70.5
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 5.5e-35 151.0 113 67.3
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 7.2e-35 150.6 113 67.3
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 1.2e-34 149.8 109 67.0
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 1.2e-34 149.8 113 63.7
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 1.2e-34 149.8 113 64.6
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 1.6e-34 149.4 109 67.0
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 2.8e-34 148.7 113 64.6
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 3.6e-34 148.3 113 65.5
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 3.6e-34 148.3 107 65.4
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 3.6e-34 148.3 109 67.0
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 6.1e-34 147.5 113 64.6
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 6.1e-34 147.5 105 66.7
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 8.0e-34 147.1 113 63.7
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 1.4e-33 146.4 103 70.9
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 3.0e-33 145.2 113 62.8
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 4.0e-33 144.8 113 62.8
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 4.0e-33 144.8 113 61.1
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 6.8e-33 144.1 113 61.9
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 8.8e-33 143.7 113 61.1
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 8.8e-33 143.7 113 61.1
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 8.8e-33 143.7 113 61.1
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 8.8e-33 143.7 113 61.1
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 8.8e-33 143.7 113 62.8
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.2e-32 143.3 113 61.9
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.2e-32 143.3 111 63.1
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 1.5e-32 142.9 113 61.1
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 1.5e-32 142.9 113 61.1
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 1.5e-32 142.9 113 61.1
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 1.5e-32 142.9 113 61.1
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 1.5e-32 142.9 113 61.9
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 2.0e-32 142.5 108 64.8
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 2.0e-32 142.5 113 60.2
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 2.6e-32 142.1 113 61.1
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 2.6e-32 142.1 113 62.8
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 3.4e-32 141.7 135 53.3
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 4.4e-32 141.4 108 64.8
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 4.4e-32 141.4 113 61.9
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 4.4e-32 141.4 113 60.2
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 7.5e-32 140.6 113 60.2
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 7.5e-32 140.6 113 60.2
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 7.5e-32 140.6 109 63.3
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 1.3e-31 139.8 107 62.6
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.7e-31 139.4 110 60.9
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 2.2e-31 139.0 113 60.2
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 2.8e-31 138.7 134 53.7
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 3.7e-31 138.3 108 60.2
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 3.7e-31 138.3 113 59.3
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 4.9e-31 137.9 108 61.1
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.1e-30 136.7 113 61.1
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 1.8e-30 136.0 113 61.1
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 1.8e-30 136.0 113 61.1
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 1.8e-30 136.0 113 59.3
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 2.4e-30 135.6 108 59.3
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.4e-30 135.6 113 61.1
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.4e-30 135.6 109 61.5
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 3.1e-30 135.2 113 58.4
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 3.1e-30 135.2 111 61.3
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 3.1e-30 135.2 112 58.9
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 3.1e-30 135.2 111 58.6
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 4.1e-30 134.8 108 58.3
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 5.4e-30 134.4 115 60.0
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 5.4e-30 134.4 113 61.1
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 7.0e-30 134.0 105 62.9
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 2.0e-29 132.5 110 60.0
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 2.0e-29 132.5 109 59.6
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 3.5e-29 131.7 111 56.8
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 1.5e-27 126.3 76 78.9
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 1.9e-27 125.9 104 59.6
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 2.5e-27 125.6 109 56.9
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 4.3e-27 124.8 72 80.6
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 4.3e-27 124.8 160 45.6
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 1.6e-26 122.9 71 78.9
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 3.6e-26 121.7 103 56.3
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 3.0e-25 118.6 84 65.5
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 1.2e-24 116.7 86 69.8
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 1.5e-24 116.3 113 54.9
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 4.4e-24 114.8 105 52.4
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 5.7e-24 114.4 62 83.9
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 1.3e-23 113.2 105 49.5
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 4.9e-23 111.3 81 65.4
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 1.1e-22 110.2 78 64.1
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 1.4e-22 109.8 78 69.2
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 2.4e-22 109.0 78 69.2
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 4.1e-22 108.2 78 67.9
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 9.2e-22 107.1 78 67.9
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 3.9e-20 101.7 78 64.1
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 8.6e-20 100.5 101 47.5
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 2.8e-18 95.5 78 57.7
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 3.6e-18 95.1 110 43.6
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 3.6e-18 95.1 78 59.0
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 4.7e-18 94.7 61 67.2
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 1.2e-16 90.1 76 56.6
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 6.0e-13 77.8 104 39.4
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 1.7e-12 76.3 75 49.3
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 7.3e-11 70.9 97 41.2
Nitab4.5_0009487g0020 Nicotiana tabacum HOM05D005067 ORTHO05D006105 3.6e-10 68.6 109 40.4


User provided reference genes

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