Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 8.7e-148 526.9 265 100.0
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 3.0e-108 395.6 262 74.4
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 2.0e-104 382.9 265 73.2
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 1.7e-103 379.8 267 73.0
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.5e-102 376.7 275 71.3
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 9.4e-102 374.0 256 73.0
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 6.1e-101 371.3 270 70.0
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 8.0e-101 370.9 265 71.3
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 8.0e-101 370.9 270 70.0
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 5.2e-100 368.2 265 70.9
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 4.4e-99 365.2 284 68.0
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 7.5e-99 364.4 273 69.2
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 1.3e-98 363.6 267 70.4
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 4.8e-98 361.7 265 67.9
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 4.8e-98 361.7 271 70.1
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 1.4e-97 360.1 265 67.5
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 1.2e-96 357.1 265 69.4
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.2e-96 357.1 267 66.3
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 2.7e-96 355.9 271 66.8
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 3.5e-96 355.5 227 77.5
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 4.5e-96 355.1 286 65.0
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 1.0e-95 354.0 272 67.3
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 1.5e-94 350.1 229 76.0
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 1.9e-94 349.7 273 66.7
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 2.5e-94 349.4 268 66.0
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 2.5e-94 349.4 266 66.9
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 2.5e-94 349.4 273 65.6
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 2.5e-94 349.4 225 77.8
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 4.2e-94 348.6 273 66.7
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 7.2e-94 347.8 271 64.9
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 9.5e-94 347.4 265 66.8
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 9.5e-94 347.4 265 66.8
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 9.5e-94 347.4 273 66.3
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.2e-93 347.1 249 71.1
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 6.1e-93 344.7 265 66.0
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 8.0e-93 344.4 265 66.4
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 8.0e-93 344.4 229 73.4
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.0e-92 344.0 274 64.6
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.4e-92 343.6 282 64.9
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 1.8e-92 343.2 264 66.7
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 2.3e-92 342.8 262 63.7
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 4.0e-92 342.0 227 74.0
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 8.9e-92 340.9 262 66.0
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.4e-91 339.0 225 74.2
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 4.4e-91 338.6 265 64.9
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 4.4e-91 338.6 225 72.9
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 5.7e-91 338.2 283 62.9
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 7.5e-91 337.8 225 72.9
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 1.3e-90 337.0 264 65.5
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.7e-90 336.7 227 73.6
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 3.7e-90 335.5 282 62.4
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 6.3e-90 334.7 263 62.7
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 6.3e-90 334.7 262 64.5
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 8.3e-90 334.3 229 71.6
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 8.3e-90 334.3 229 71.6
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 8.3e-90 334.3 262 63.7
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 2.4e-89 332.8 225 73.8
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 3.1e-89 332.4 267 64.4
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 5.4e-89 331.6 263 62.4
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.2e-89 330.9 273 62.6
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 1.2e-88 330.5 224 72.8
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 5.9e-88 328.2 262 63.4
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 1.3e-87 327.0 273 61.9
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 1.3e-87 327.0 267 62.2
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 2.3e-87 326.2 262 61.8
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 3.9e-87 325.5 274 62.0
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 5.0e-87 325.1 267 61.8
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.1e-86 323.9 225 70.2
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 1.9e-86 323.2 257 62.6
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 1.9e-86 323.2 257 62.6
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 2.5e-86 322.8 222 73.4
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 3.3e-86 322.4 234 68.8
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 5.6e-86 321.6 222 73.4
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 5.6e-86 321.6 263 61.2
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 5.6e-86 321.6 263 61.2
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 5.6e-86 321.6 263 61.2
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 5.6e-86 321.6 262 61.5
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.5e-86 320.9 273 61.2
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.2e-85 320.5 224 71.0
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.7e-85 318.5 233 68.7
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 8.0e-85 317.8 225 70.2
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 2.3e-84 316.2 274 62.0
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 5.2e-84 315.1 224 68.3
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.8e-84 314.7 291 58.1
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 8.9e-84 314.3 280 60.4
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 1.2e-83 313.9 271 62.4
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 1.7e-82 310.1 262 60.3
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 8.3e-82 307.8 219 69.4
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 1.1e-81 307.4 219 68.5
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 1.9e-81 306.6 274 58.4
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.7e-80 302.8 219 67.1
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 7.8e-80 301.2 219 67.6
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 7.8e-80 301.2 219 67.6
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 2.3e-79 299.7 219 68.0
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 3.0e-79 299.3 222 66.7
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 3.9e-79 298.9 231 67.5
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 2.5e-78 296.2 269 56.9
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 6.2e-77 291.6 273 57.9
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 2.3e-76 289.7 324 50.0
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 4.0e-76 288.9 231 65.4
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 9.8e-75 284.3 187 73.8
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 6.6e-71 271.6 470 37.2
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 2.0e-67 260.0 209 57.9
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 3.2e-65 252.7 227 58.6
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 1.3e-63 247.3 209 55.0
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 6.8e-60 235.0 210 56.2
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 6.2e-53 211.8 209 50.7
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 4.0e-52 209.1 165 63.6
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 2.6e-51 206.5 211 49.3
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.7e-47 193.7 157 61.8
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.9e-46 190.3 126 77.0
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 5.6e-46 188.7 117 74.4
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.1e-40 170.2 110 71.8
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 7.9e-40 168.3 106 72.6
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.3e-38 162.5 149 57.0
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.8e-36 157.1 99 72.7
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 6.5e-34 148.7 117 68.4
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 7.1e-33 145.2 118 67.8
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 3.7e-29 132.9 134 53.7
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.0e-23 114.8 232 31.9
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 5.3e-20 102.4 84 59.5
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 6.7e-15 85.5 105 49.5
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 4.3e-14 82.8 88 47.7
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 7.4e-14 82.0 67 59.7
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 4.7e-08 62.8 81 42.0
SalBow5G0658 Salvia bowleyana HOM05D041286 ORTHO05D008009 8.8e-07 58.5 47 61.7
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 4.4e-06 56.2 87 33.3


User provided reference genes

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