Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 5.0e-99 364.4 176 100.0
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 3.3e-87 325.1 176 89.2
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 1.7e-86 322.8 177 87.6
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 7.7e-84 313.9 176 86.4
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 1.2e-81 306.6 176 81.8
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.2e-81 306.6 176 83.0
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 4.7e-81 304.7 176 83.5
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 4.7e-81 304.7 176 81.2
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 8.0e-81 303.9 176 84.7
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 1.0e-80 303.5 176 83.0
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 1.4e-80 303.1 176 84.7
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 1.4e-80 303.1 176 83.0
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 2.3e-80 302.4 177 82.5
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.3e-80 302.4 167 87.4
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 3.0e-80 302.0 166 86.1
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 3.0e-80 302.0 174 83.3
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 5.2e-80 301.2 168 86.3
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 6.7e-80 300.8 176 80.7
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 6.7e-80 300.8 176 81.2
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 6.7e-80 300.8 176 81.2
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 6.7e-80 300.8 176 81.2
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 8.8e-80 300.4 176 80.1
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 1.2e-79 300.1 176 83.0
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 1.5e-79 299.7 166 87.3
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.5e-79 299.7 176 80.7
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.0e-79 299.3 176 81.2
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 3.3e-79 298.5 176 83.0
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 4.4e-79 298.1 176 81.2
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 5.7e-79 297.7 176 81.2
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 5.7e-79 297.7 177 81.9
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.7e-79 297.7 176 80.7
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.7e-79 297.7 176 80.7
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 5.7e-79 297.7 176 81.2
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 5.7e-79 297.7 177 81.9
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 7.5e-79 297.4 176 81.2
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 7.5e-79 297.4 177 81.4
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 7.5e-79 297.4 176 80.7
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.7e-78 296.2 176 78.4
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 2.8e-78 295.4 177 80.8
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 2.8e-78 295.4 181 81.8
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 2.8e-78 295.4 176 80.1
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 3.7e-78 295.0 167 84.4
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.1e-77 293.5 179 79.3
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.4e-77 292.4 176 78.4
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 3.1e-77 292.0 175 80.0
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 4.1e-77 291.6 176 79.0
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 5.3e-77 291.2 167 80.8
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 5.3e-77 291.2 179 78.8
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 7.0e-77 290.8 178 79.2
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 9.1e-77 290.4 177 80.2
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.7e-76 288.9 176 78.4
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 2.7e-76 288.9 178 77.5
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 2.7e-76 288.9 176 79.0
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 3.5e-76 288.5 167 82.6
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 3.5e-76 288.5 177 79.1
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.5e-76 288.1 176 78.4
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 7.7e-76 287.3 177 79.1
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.0e-75 287.0 176 77.8
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.0e-75 287.0 176 77.8
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.3e-75 286.6 170 78.2
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 3.8e-75 285.0 176 76.1
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 3.8e-75 285.0 176 78.4
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.8e-75 285.0 171 79.5
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 3.8e-75 285.0 177 78.5
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 5.0e-75 284.6 177 78.5
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 8.5e-75 283.9 176 75.6
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 8.5e-75 283.9 176 75.6
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.1e-74 283.5 166 79.5
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.9e-74 282.7 183 76.0
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 1.9e-74 282.7 175 77.1
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.9e-74 282.7 175 77.1
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 1.9e-74 282.7 164 81.1
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 2.5e-74 282.3 176 77.3
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.2e-74 282.0 161 83.2
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.2e-74 281.6 175 76.6
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 5.5e-74 281.2 174 76.4
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 7.2e-74 280.8 176 75.0
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 7.2e-74 280.8 175 77.1
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 9.4e-74 280.4 175 76.0
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 9.4e-74 280.4 174 77.0
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 2.1e-73 279.3 177 75.1
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 2.1e-73 279.3 167 81.4
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 2.1e-73 279.3 166 80.1
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 8.0e-73 277.3 176 76.1
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.0e-72 276.9 169 76.3
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.4e-72 276.6 176 77.3
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.8e-72 276.2 176 73.3
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 3.0e-72 275.4 182 74.2
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 3.0e-72 275.4 228 63.2
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 4.0e-72 275.0 176 75.6
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 4.0e-72 275.0 176 74.4
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 5.2e-72 274.6 176 75.0
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 8.8e-72 273.9 176 74.4
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 8.8e-72 273.9 168 76.8
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.2e-71 273.5 168 79.8
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-71 272.7 170 75.9
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.0e-71 272.7 176 72.7
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 4.4e-71 271.6 169 75.7
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 4.4e-71 271.6 178 73.6
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 5.7e-71 271.2 169 75.1
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 5.7e-71 271.2 169 75.1
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 5.7e-71 271.2 169 75.1
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.5e-71 270.8 171 74.9
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 7.5e-71 270.8 172 73.3
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 9.8e-71 270.4 169 75.1
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.3e-70 270.0 176 71.6
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.3e-70 270.0 176 74.4
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.7e-70 269.6 177 72.3
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 8.3e-70 267.3 177 71.2
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 8.3e-70 267.3 175 73.7
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.1e-69 266.9 167 76.0
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 2.4e-69 265.8 164 76.8
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.4e-69 265.8 176 72.7
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 3.1e-69 265.4 164 76.2
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 3.1e-69 265.4 154 79.9
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 3.1e-69 265.4 172 71.5
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 4.1e-69 265.0 172 71.5
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.0e-69 264.2 167 74.9
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 7.0e-69 264.2 168 75.0
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.6e-68 263.1 157 79.6
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.0e-67 260.4 156 78.2
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 6.5e-67 257.7 177 70.1
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 3.2e-66 255.4 158 76.6
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 3.2e-66 255.4 175 69.1
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 3.2e-66 255.4 174 69.0
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 9.5e-66 253.8 169 72.2
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.6e-65 253.1 177 68.9
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 1.6e-65 253.1 178 66.9
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.6e-65 253.1 167 71.9
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.6e-65 251.9 173 67.6
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 4.7e-65 251.5 166 72.3
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 5.2e-64 248.1 170 69.4
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 1.7e-62 243.0 166 70.5
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.2e-57 226.9 168 65.5
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.6e-57 226.5 168 65.5
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.3e-51 206.8 123 79.7
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.3e-51 206.8 123 79.7
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.9e-50 203.0 138 69.6
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 2.8e-49 199.1 124 78.2
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 4.0e-48 195.3 123 74.0
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 8.9e-48 194.1 114 79.8
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 2.6e-47 192.6 123 76.4
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.4e-45 186.0 116 76.7
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 4.1e-45 185.3 188 49.5
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 4.4e-39 165.2 171 48.5
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 7.1e-37 157.9 86 81.4
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.7e-36 156.0 105 70.5
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.3e-35 153.7 98 72.4
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.6e-35 151.4 102 70.6
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 1.4e-32 143.7 95 74.7
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 7.3e-26 121.3 109 56.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 6.2e-25 118.2 182 36.8
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 3.4e-23 112.5 60 80.0
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.7e-22 110.2 118 47.5
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.5e-20 102.4 142 40.8
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 6.0e-20 101.7 156 37.8
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.1e-18 97.4 86 57.0
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-18 97.1 95 48.4
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 2.5e-18 96.3 54 81.5
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 2.4e-16 89.7 52 80.8
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 9.9e-15 84.3 48 81.2
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 4.9e-14 82.0 50 78.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.8e-11 73.6 63 61.9
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 1.3e-06 57.4 35 71.4
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 6.4e-06 55.1 36 75.0


User provided reference genes

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