Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 2.1e-103 379.0 189 100.0
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 7.6e-21 104.8 158 44.9
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 1.0e-17 94.4 166 40.4
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 1.0e-17 94.4 163 41.1
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 1.3e-17 94.0 155 43.9
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 1.8e-17 93.6 152 42.8
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 1.8e-17 93.6 155 42.6
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 1.8e-17 93.6 162 41.4
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 3.0e-17 92.8 152 42.8
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 3.0e-17 92.8 155 42.6
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 3.0e-17 92.8 152 42.1
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 3.0e-17 92.8 152 42.1
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 3.9e-17 92.4 152 42.8
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 3.9e-17 92.4 153 41.8
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 3.9e-17 92.4 155 42.6
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 3.9e-17 92.4 157 42.0
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 5.1e-17 92.0 152 43.4
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 5.1e-17 92.0 164 40.2
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 6.7e-17 91.7 155 41.9
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 6.7e-17 91.7 166 39.2
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 6.7e-17 91.7 152 42.1
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 8.7e-17 91.3 155 43.2
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 8.7e-17 91.3 152 41.4
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 8.7e-17 91.3 152 40.8
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 8.7e-17 91.3 155 41.9
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 1.1e-16 90.9 152 41.4
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 1.1e-16 90.9 152 41.4
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 1.1e-16 90.9 155 41.9
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 1.5e-16 90.5 152 42.1
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 1.5e-16 90.5 157 40.8
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 1.5e-16 90.5 152 42.8
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 1.5e-16 90.5 179 38.5
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 1.9e-16 90.1 152 42.1
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 3.3e-16 89.4 157 42.0
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 4.3e-16 89.0 171 38.6
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 4.3e-16 89.0 173 39.3
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 4.3e-16 89.0 173 39.3
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 4.3e-16 89.0 173 39.3
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 4.3e-16 89.0 157 40.1
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 4.3e-16 89.0 153 41.2
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 4.3e-16 89.0 153 40.5
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 5.6e-16 88.6 152 41.4
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 5.6e-16 88.6 158 41.1
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.6e-16 88.6 152 41.4
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 5.6e-16 88.6 152 39.5
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 5.6e-16 88.6 155 41.9
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 5.6e-16 88.6 152 40.8
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 7.4e-16 88.2 158 40.5
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 7.4e-16 88.2 158 41.1
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 9.6e-16 87.8 158 40.5
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 1.3e-15 87.4 173 38.7
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 1.3e-15 87.4 173 38.7
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.3e-15 87.4 151 40.4
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 1.6e-15 87.0 155 40.6
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 1.6e-15 87.0 152 40.1
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 1.6e-15 87.0 157 39.5
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 1.6e-15 87.0 152 40.8
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 2.1e-15 86.7 155 40.6
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 2.8e-15 86.3 152 41.4
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 3.7e-15 85.9 155 39.4
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 4.8e-15 85.5 157 39.5
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 8.2e-15 84.7 152 39.5
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 8.2e-15 84.7 170 36.5
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 8.2e-15 84.7 152 41.4
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 8.2e-15 84.7 155 40.0
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 1.1e-14 84.3 152 40.1
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 1.4e-14 84.0 152 40.1
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 1.4e-14 84.0 152 39.5
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 1.8e-14 83.6 157 39.5
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 2.4e-14 83.2 152 38.8
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 2.4e-14 83.2 170 35.9
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 2.4e-14 83.2 163 39.9
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 3.1e-14 82.8 152 39.5
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 3.1e-14 82.8 152 38.8
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 4.0e-14 82.4 170 35.9
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 5.3e-14 82.0 152 38.2
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 9.0e-14 81.3 184 35.9
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.2e-13 80.9 167 36.5
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 1.2e-13 80.9 155 39.4
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 2.6e-13 79.7 152 38.2
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 2.6e-13 79.7 152 38.2
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 4.5e-13 79.0 157 38.9
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 4.5e-13 79.0 153 38.6
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 5.8e-13 78.6 154 40.9
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 5.8e-13 78.6 153 37.9
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 1.7e-12 77.0 152 36.2
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 6.5e-12 75.1 155 36.1
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 6.5e-12 75.1 155 36.1
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 6.5e-12 75.1 155 36.1
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 2.5e-11 73.2 89 50.6
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 3.2e-11 72.8 89 50.6
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 4.2e-11 72.4 175 34.9
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 5.5e-11 72.0 171 34.5
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 9.3e-11 71.2 152 36.8
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 9.3e-11 71.2 152 36.8
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 2.7e-10 69.7 174 37.9
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 3.5e-10 69.3 89 48.3
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 1.0e-09 67.8 89 47.2
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 5.1e-09 65.5 168 32.7
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 2.5e-08 63.2 180 31.7
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 3.3e-08 62.8 89 42.7
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 5.7e-08 62.0 89 42.7
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 1.3e-07 60.8 89 41.6
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 1.3e-07 60.8 89 43.8
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 4.8e-07 58.9 41 68.3
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 4.8e-07 58.9 41 68.3
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 4.8e-07 58.9 89 43.8
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 2.4e-06 56.6 85 43.5
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 9.0e-06 54.7 170 29.4


User provided reference genes

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