Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 9.4e-147 523.5 259 100.0
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 3.1e-89 332.4 185 89.7
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 1.5e-88 330.1 181 90.1
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 2.0e-88 329.7 181 90.1
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.6e-88 329.3 181 90.6
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 3.4e-88 328.9 190 85.8
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 4.4e-88 328.6 181 89.5
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 4.4e-88 328.6 182 89.6
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 5.8e-88 328.2 181 89.0
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 7.6e-88 327.8 181 89.5
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 7.6e-88 327.8 181 89.5
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 9.9e-88 327.4 181 89.0
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 9.9e-88 327.4 181 89.0
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 9.9e-88 327.4 179 89.9
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.3e-87 327.0 181 89.5
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 2.2e-87 326.2 181 89.0
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 2.2e-87 326.2 181 89.5
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.9e-87 325.9 181 89.0
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 2.9e-87 325.9 181 89.5
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 3.8e-87 325.5 180 88.9
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 3.8e-87 325.5 180 88.9
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 3.8e-87 325.5 182 88.5
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.8e-87 325.5 181 88.4
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 4.9e-87 325.1 181 87.8
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 6.4e-87 324.7 181 89.5
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.4e-87 324.7 181 89.5
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.4e-87 324.7 181 89.5
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 6.4e-87 324.7 181 87.8
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 8.4e-87 324.3 181 89.0
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 8.4e-87 324.3 181 89.5
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 8.4e-87 324.3 179 89.4
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.1e-86 323.9 181 89.5
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.4e-86 323.6 181 88.4
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.4e-86 323.6 181 89.0
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.4e-86 323.6 181 87.8
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.9e-86 323.2 181 87.8
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.9e-86 323.2 181 87.8
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 1.9e-86 323.2 181 87.3
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 1.9e-86 323.2 181 89.0
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 2.4e-86 322.8 181 88.4
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 3.2e-86 322.4 179 88.3
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 3.2e-86 322.4 181 88.4
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.2e-86 322.4 181 89.0
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 3.2e-86 322.4 249 70.3
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 4.2e-86 322.0 181 88.4
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 5.4e-86 321.6 181 87.8
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 5.4e-86 321.6 261 66.7
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 5.4e-86 321.6 178 88.8
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 7.1e-86 321.2 247 70.0
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 7.1e-86 321.2 181 87.8
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 7.1e-86 321.2 181 86.7
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 9.3e-86 320.9 181 87.8
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 9.3e-86 320.9 181 88.4
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 9.3e-86 320.9 181 87.8
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 9.3e-86 320.9 181 88.4
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 9.3e-86 320.9 181 86.2
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.2e-85 320.5 181 88.4
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.2e-85 320.5 181 85.1
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 1.6e-85 320.1 181 86.7
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 1.6e-85 320.1 181 86.2
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 2.1e-85 319.7 181 86.7
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 2.1e-85 319.7 181 86.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 2.1e-85 319.7 182 86.8
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 2.1e-85 319.7 181 86.2
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 2.7e-85 319.3 181 86.2
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 2.7e-85 319.3 181 86.2
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 2.7e-85 319.3 181 86.2
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 2.7e-85 319.3 181 86.2
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 2.7e-85 319.3 181 87.8
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 3.5e-85 318.9 181 86.2
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 3.5e-85 318.9 179 88.3
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 3.5e-85 318.9 247 70.4
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 4.6e-85 318.5 181 87.8
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 4.6e-85 318.5 181 86.2
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 4.6e-85 318.5 181 85.6
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 6.0e-85 318.2 180 87.8
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 6.0e-85 318.2 179 86.0
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 6.0e-85 318.2 181 86.2
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 6.0e-85 318.2 178 87.6
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 7.8e-85 317.8 181 86.2
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 7.8e-85 317.8 179 87.7
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.3e-84 317.0 181 85.6
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.3e-84 317.0 181 86.2
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.3e-84 317.0 181 86.7
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.7e-84 316.6 181 85.6
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.3e-84 316.2 181 86.2
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.3e-84 316.2 181 86.7
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 3.0e-84 315.8 181 86.2
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 3.9e-84 315.5 181 85.6
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 3.9e-84 315.5 181 85.6
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 8.7e-84 314.3 181 85.1
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 8.7e-84 314.3 181 87.3
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 8.7e-84 314.3 181 85.6
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 1.1e-83 313.9 181 86.2
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.5e-83 313.5 181 85.1
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 1.5e-83 313.5 181 86.2
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.5e-83 313.5 175 88.6
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 5.6e-83 311.6 181 85.6
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 9.6e-83 310.8 179 84.9
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 3.4e-80 302.4 181 83.4
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 8.4e-79 297.7 187 80.7
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.9e-78 296.6 245 65.7
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 4.6e-77 292.0 179 79.9
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.0e-76 290.8 179 77.7
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 2.3e-76 289.7 179 78.8
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 3.9e-76 288.9 180 78.9
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 4.5e-72 275.4 154 89.0
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 6.0e-69 265.0 153 86.3
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 5.1e-68 261.9 179 72.6
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 4.3e-67 258.8 157 82.8
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.6e-66 256.9 165 80.0
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.4e-65 253.8 165 79.4
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.4e-65 253.8 166 77.1
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.3e-63 247.3 154 81.2
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.1e-62 244.2 154 78.6
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 2.5e-62 243.0 180 67.8
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 9.3e-62 241.1 154 79.2
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.3e-60 237.3 181 69.1
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 1.3e-60 237.3 158 76.6
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 5.1e-60 235.3 133 88.7
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 7.9e-53 211.5 151 72.8
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.5e-46 189.9 154 64.9
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.5e-40 170.6 171 51.5
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 1.1e-38 164.5 177 54.8
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 7.2e-38 161.8 83 92.8
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 3.5e-32 142.9 69 98.6
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 5.0e-31 139.0 73 89.0
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-29 134.0 67 95.5
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 1.0e-28 131.3 86 79.1
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 7.5e-27 125.2 109 60.6
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 7.0e-25 118.6 93 64.5
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 8.5e-23 111.7 146 50.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 4.5e-16 89.4 46 84.8


User provided reference genes

Program Settings