Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 1.0e-199 699.9 369 100.0
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 6.9e-143 511.1 371 72.8
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 6.4e-141 504.6 371 72.2
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 1.9e-137 493.0 372 68.3
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 8.2e-136 487.6 312 74.7
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 4.0e-135 485.3 310 75.8
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.0e-134 483.0 305 77.0
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 5.8e-134 481.5 305 76.4
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 1.3e-133 480.3 312 74.4
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 2.2e-133 479.6 306 74.8
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 1.4e-132 476.9 314 75.8
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 4.2e-132 475.3 369 67.8
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 7.1e-132 474.6 299 76.6
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 9.3e-132 474.2 307 76.2
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 1.2e-131 473.8 308 74.4
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.6e-131 473.4 307 76.2
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 1.6e-131 473.4 307 75.9
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 2.1e-131 473.0 311 73.3
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 2.7e-131 472.6 308 74.7
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 2.7e-131 472.6 299 77.9
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 7.9e-131 471.1 306 77.1
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 1.0e-130 470.7 306 75.2
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.0e-130 470.7 368 67.7
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 2.3e-130 469.5 303 73.9
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 3.0e-130 469.2 372 66.7
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 5.1e-130 468.4 306 75.2
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 8.7e-130 467.6 302 75.8
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 8.7e-130 467.6 303 73.6
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 1.1e-129 467.2 306 73.9
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.1e-129 467.2 371 66.0
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.1e-129 467.2 371 66.0
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.1e-129 467.2 308 74.0
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 1.9e-129 466.5 372 66.1
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.9e-129 466.5 381 65.9
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 2.5e-129 466.1 304 74.0
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 4.3e-129 465.3 310 71.6
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 5.7e-129 464.9 309 74.1
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 9.7e-129 464.2 307 73.0
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 9.7e-129 464.2 359 66.6
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 9.7e-129 464.2 377 66.0
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 1.3e-128 463.8 355 68.2
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 1.6e-128 463.4 312 74.0
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 1.6e-128 463.4 311 73.0
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 2.2e-128 463.0 318 73.3
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 2.2e-128 463.0 372 65.9
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.8e-128 462.6 310 73.9
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 3.7e-128 462.2 307 72.6
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 6.3e-128 461.5 302 75.5
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 8.2e-128 461.1 306 73.9
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 1.1e-127 460.7 314 72.6
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.1e-127 460.7 374 63.4
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.8e-127 459.9 300 75.0
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 2.4e-127 459.5 306 72.9
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 3.1e-127 459.1 369 67.5
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 3.1e-127 459.1 373 65.4
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 5.3e-127 458.4 309 72.5
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 5.3e-127 458.4 369 66.1
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.2e-126 457.2 370 64.1
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 1.5e-126 456.8 314 71.3
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 2.6e-126 456.1 307 73.6
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 2.6e-126 456.1 369 65.9
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 4.5e-126 455.3 307 72.6
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 4.5e-126 455.3 371 64.7
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 1.3e-125 453.8 377 64.5
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.3e-125 453.8 370 65.9
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 1.7e-125 453.4 339 69.6
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 1.7e-125 453.4 303 73.3
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 8.5e-125 451.1 315 70.8
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 1.4e-124 450.3 309 71.5
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 2.5e-124 449.5 307 72.0
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 5.5e-124 448.4 309 71.2
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 1.2e-123 447.2 307 71.7
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 1.6e-123 446.8 378 62.4
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.6e-123 446.8 285 75.4
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 1.6e-123 446.8 299 72.9
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 1.0e-122 444.1 312 69.6
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 1.4e-122 443.7 309 71.2
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 2.0e-121 439.9 308 69.8
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 4.3e-121 438.7 298 73.5
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 9.7e-121 437.6 329 68.1
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 2.2e-120 436.4 276 76.8
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 1.8e-119 433.3 299 71.6
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.8e-119 433.3 307 70.0
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 3.1e-119 432.6 353 66.3
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 9.1e-119 431.0 314 71.0
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 1.2e-118 430.6 316 68.7
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 1.5e-118 430.3 308 69.2
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 3.4e-118 429.1 291 72.5
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 5.9e-118 428.3 374 60.4
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 5.5e-116 421.8 344 65.1
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.2e-112 409.8 313 67.1
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 2.8e-112 409.5 302 65.9
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 5.3e-111 405.2 306 66.7
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 6.5e-109 398.3 226 82.3
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.4e-108 397.1 328 61.6
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 2.7e-107 392.9 384 55.2
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 4.7e-107 392.1 311 65.0
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 2.2e-104 383.3 299 63.5
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 4.8e-104 382.1 352 59.7
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 2.0e-102 376.7 368 58.7
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.2e-101 373.2 287 63.1
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 3.8e-101 372.5 258 66.7
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 2.1e-99 366.7 242 73.1
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 4.7e-99 365.5 288 64.6
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.8e-98 363.6 247 67.6
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.8e-98 363.6 241 74.3
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.0e-97 360.1 258 66.3
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 1.7e-93 347.1 218 73.4
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.7e-85 320.5 246 67.9
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 7.2e-84 315.1 274 60.6
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.2e-83 314.3 299 56.2
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 2.4e-79 300.1 310 52.6
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.3e-77 294.3 237 65.0
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 4.0e-74 282.7 252 56.7
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 9.2e-71 271.6 245 62.4
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 1.2e-70 271.2 214 61.7
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 6.6e-69 265.4 192 68.8
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 4.4e-65 252.7 247 58.7
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 5.4e-63 245.7 362 46.1
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.3e-61 240.4 199 57.8
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 6.6e-61 238.8 270 47.8
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 4.3e-60 236.1 200 57.5
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 9.5e-60 235.0 190 60.0
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 3.6e-59 233.0 229 52.0
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.0e-57 227.3 196 57.7
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 4.7e-51 206.1 209 50.2
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 2.8e-43 180.3 111 74.8
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 2.9e-40 170.2 122 65.6
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.6e-38 164.5 290 41.7
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 4.6e-38 162.9 141 56.0
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.5e-36 157.9 100 75.0
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.8e-35 153.7 229 46.7
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 6.2e-35 152.5 117 60.7
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 2.1e-30 137.5 68 88.2
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 2.7e-30 137.1 109 66.1
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 1.3e-24 118.2 112 58.0
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 1.8e-18 97.8 98 55.1
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 3.8e-16 90.1 65 61.5
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 5.5e-15 86.3 94 54.3
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 7.9e-14 82.4 105 46.7
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 3.0e-13 80.5 37 91.9
FAN07G0088 Fragaria x ananassa HOM05D001659 ORTHO05D001659 1.6e-11 74.7 182 31.9
RcHm_v2.0_Chr4g0397111 Rosa chinensis HOM05D001659 ORTHO05D001659 2.2e-11 74.3 221 29.0
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 2.8e-11 73.9 78 47.4
FvH4_4g05930 Fragaria vesca HOM05D001659 ORTHO05D001659 8.2e-11 72.4 182 31.3
FAN12G0150 Fragaria x ananassa HOM05D001659 ORTHO05D001659 8.2e-11 72.4 182 31.3
FAN17G3134 Fragaria x ananassa HOM05D001659 ORTHO05D001659 8.2e-11 72.4 182 31.3
MD13G1231500 Malus domestica HOM05D001659 ORTHO05D001659 1.8e-10 71.2 193 31.1
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 4.1e-10 70.1 70 57.1
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 5.3e-10 69.7 50 68.0
SMO239G0068 Selaginella moellendorffii HOM05D001659 ORTHO05D001659 2.9e-08 63.9 180 27.8
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 6.1e-06 56.2 53 56.6


User provided reference genes

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