Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 0.0e+00 2677.5 1391 100.0
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 0.0e+00 1146.7 1395 52.0
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 0.0e+00 1075.1 1379 50.7
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 9.5e-312 1073.5 1374 50.5
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.3e-295 1020.4 1424 48.0
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 8.0e-269 931.4 1417 45.7
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 5.6e-254 882.1 1496 42.7
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 5.4e-249 865.5 1323 44.3
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.4e-241 840.9 1483 41.8
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.2e-240 837.8 1470 40.8
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.0e-239 834.7 1468 41.3
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.7e-239 833.9 1409 42.7
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.1e-238 831.2 1504 40.8
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 1.5e-238 830.9 1472 41.2
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.3e-237 827.8 1409 42.5
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.6e-237 827.4 1471 41.5
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 2.4e-236 823.5 1539 40.2
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 2.4e-236 823.5 1468 41.1
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 4.5e-227 792.7 1475 39.9
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 8.4e-226 788.5 1308 42.7
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 7.1e-225 785.4 1450 40.6
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 9.3e-225 785.0 1509 40.4
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 4.6e-224 782.7 1392 41.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 7.9e-224 781.9 1506 39.8
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.8e-223 780.8 1357 42.2
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.4e-220 770.4 1435 40.3
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 3.8e-218 763.1 1443 40.9
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 7.9e-216 755.4 1446 40.4
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 7.9e-216 755.4 1446 39.2
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.0e-215 755.0 1446 40.3
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 8.2e-213 745.3 1396 39.0
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.1e-212 745.0 1410 39.6
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 2.4e-212 743.8 1393 39.3
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 7.7e-211 738.8 1295 40.8
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 2.5e-209 733.8 1446 39.8
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 4.6e-208 729.6 1474 38.5
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 6.1e-208 729.2 1413 40.3
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 7.9e-208 728.8 1416 40.0
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.0e-207 728.4 1396 39.9
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 2.3e-207 727.2 1430 40.0
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.5e-206 724.5 1425 39.2
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 3.7e-205 719.9 1474 38.9
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 4.1e-204 716.5 1469 38.9
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 1.0e-202 711.8 1224 41.5
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 2.9e-202 710.3 1381 40.0
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 5.0e-202 709.5 1466 38.5
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.9e-201 707.6 1359 38.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.2e-200 704.9 1471 38.3
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.6e-200 704.5 1191 42.4
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 2.1e-200 704.1 1365 38.8
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 3.6e-200 703.4 1289 40.3
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.0e-199 701.8 1271 40.6
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.3e-199 700.7 1431 38.1
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 8.8e-199 698.7 1462 37.7
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.5e-198 698.0 1221 41.7
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 2.0e-198 697.6 1475 36.9
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 3.3e-198 696.8 1491 37.9
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 2.2e-197 694.1 1411 39.5
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 2.0e-195 687.6 1312 39.8
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.5e-195 686.8 1300 39.6
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 2.9e-194 683.7 1405 38.2
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 2.5e-193 680.6 1292 39.7
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 9.4e-193 678.7 1324 39.6
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.2e-192 678.3 1319 39.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.1e-192 677.6 1258 40.6
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 1.4e-191 674.9 1332 39.0
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 7.0e-188 662.5 1301 40.0
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 6.5e-186 656.0 1345 38.6
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 3.2e-185 653.7 1289 39.3
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 1.6e-184 651.4 1275 40.3
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 2.1e-184 651.0 1388 38.6
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.3e-181 641.7 1466 37.0
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 9.4e-177 625.5 1446 37.1
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.2e-176 625.2 1313 37.5
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 6.3e-173 612.8 1104 40.6
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.6e-171 608.2 1411 36.9
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 3.5e-171 607.1 1288 37.9
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 3.6e-168 597.0 1069 40.2
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 6.8e-167 592.8 1009 40.7
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 7.5e-166 589.3 967 40.7
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 2.2e-165 587.8 1244 37.7
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.5e-161 575.1 1312 37.5
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 2.2e-157 561.2 1370 36.1
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 5.0e-154 550.1 1352 36.1
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 4.3e-153 547.0 1388 35.8
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 3.6e-152 543.9 1373 35.0
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 2.2e-149 534.6 1443 34.6
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 2.9e-149 534.3 1069 38.7
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 5.6e-145 520.0 1348 35.2
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 5.6e-145 520.0 1348 35.2
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.8e-144 517.7 1196 36.1
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.8e-143 515.0 1416 34.7
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 3.1e-143 514.2 1250 35.4
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 4.0e-143 513.8 1336 35.1
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 5.2e-143 513.5 1059 37.3
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 3.4e-142 510.8 1117 37.5
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 3.4e-142 510.8 1342 34.9
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 5.6e-137 493.4 1030 36.7
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.9e-129 468.4 614 48.7
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 3.6e-128 464.2 595 49.4
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.1e-113 416.0 884 37.0
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 5.6e-113 413.7 1077 33.3
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 7.4e-113 413.3 672 44.6
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 7.6e-110 403.3 804 36.8
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.3e-103 380.6 1262 32.3
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.8e-98 365.5 630 41.6
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 2.5e-97 361.7 441 50.3
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 2.2e-93 348.6 497 45.5
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 6.5e-93 347.1 671 38.9
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 7.9e-91 340.1 476 47.3
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 5.1e-90 337.4 801 33.1
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 5.0e-85 320.9 471 44.4
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.4e-79 302.0 303 55.4
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 2.2e-72 278.9 402 47.8
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 8.8e-66 256.9 274 52.9
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.4e-58 233.0 493 36.5
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 1.5e-57 229.6 494 36.6
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.1e-55 223.4 790 30.0
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 5.6e-52 211.1 576 31.1
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 1.2e-46 193.4 777 29.7
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 8.6e-45 187.2 937 24.1
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.9e-44 186.0 458 34.5
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 2.9e-40 172.2 153 56.9
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 7.8e-38 164.1 742 27.9
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.3e-37 163.3 318 43.7
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.0e-33 149.4 517 29.8
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 2.4e-31 142.5 145 52.4
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 3.2e-31 142.1 275 43.3
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.1e-30 139.4 247 39.7
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 1.7e-29 136.3 359 33.1
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 5.4e-23 114.8 622 25.7
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 7.1e-23 114.4 649 27.7
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 2.3e-21 109.4 679 24.6
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 3.0e-21 109.0 552 26.4
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.6e-19 103.2 466 29.2
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-17 97.1 133 51.1
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.9e-16 91.7 125 44.8
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.6e-11 76.6 69 53.6
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 8.1e-11 74.3 232 28.0
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.6e-09 69.3 243 28.0
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.7e-08 66.6 178 34.8
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.8e-08 65.5 363 28.7
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 1.6e-06 60.1 131 38.9


User provided reference genes

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