Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 2.8e-217 758.8 547 100.0
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.5e-130 470.7 548 69.0
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 4.2e-128 462.6 555 66.1
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 4.6e-127 459.1 549 60.7
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.9e-125 453.8 549 62.7
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 5.6e-125 452.2 550 63.1
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 7.4e-125 451.8 550 65.6
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.3e-124 451.1 548 62.2
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 3.1e-123 446.4 549 60.7
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 9.0e-123 444.9 553 61.7
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 2.6e-122 443.4 554 65.9
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 9.9e-122 441.4 551 65.9
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.3e-121 441.0 551 62.8
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.9e-121 439.9 588 54.4
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 5.5e-120 435.6 550 60.5
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 1.6e-119 434.1 551 61.5
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.6e-119 432.6 549 61.7
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.0e-118 431.4 549 65.0
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.3e-118 430.3 547 64.2
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.5e-117 427.6 548 63.1
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 3.7e-116 422.9 544 61.6
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.1e-115 421.4 552 66.3
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.8e-115 420.6 573 59.0
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 6.9e-115 418.7 546 66.3
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 5.8e-114 415.6 547 58.5
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 7.6e-114 415.2 528 69.9
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.3e-113 414.5 552 62.9
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 1.3e-113 414.5 551 59.5
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 2.2e-113 413.7 549 64.3
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 2.9e-113 413.3 491 67.6
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 8.4e-113 411.8 548 62.8
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 1.1e-112 411.4 556 60.4
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.1e-112 411.4 548 62.2
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.9e-112 410.6 561 61.0
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.9e-112 410.6 550 62.7
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 2.5e-112 410.2 552 64.3
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.5e-112 410.2 550 62.7
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 4.2e-112 409.5 548 62.4
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 5.5e-112 409.1 548 59.7
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.5e-112 409.1 555 64.0
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 9.3e-112 408.3 548 62.2
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.2e-111 407.9 556 62.8
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 2.1e-111 407.1 551 61.9
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 3.5e-111 406.4 550 59.8
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.8e-110 404.1 552 66.8
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.8e-110 404.1 563 60.2
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 5.1e-110 402.5 543 58.0
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.1e-109 401.4 578 63.7
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.1e-109 401.4 553 59.3
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 4.3e-109 399.4 570 60.9
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 4.3e-109 399.4 562 64.6
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 9.6e-109 398.3 553 63.8
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 2.1e-108 397.1 554 63.0
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 8.2e-108 395.2 557 62.1
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.4e-107 394.4 598 56.5
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 5.3e-107 392.5 568 56.9
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 6.9e-107 392.1 562 59.8
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 9.0e-107 391.7 550 63.1
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 2.6e-106 390.2 558 62.7
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.3e-105 387.9 548 62.8
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 2.2e-105 387.1 553 61.1
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 6.5e-105 385.6 553 65.6
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 8.5e-105 385.2 547 63.6
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.4e-104 384.4 555 61.3
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 3.2e-104 383.3 554 63.4
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 5.5e-104 382.5 555 66.7
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 2.7e-103 380.2 555 56.6
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 3.6e-103 379.8 559 63.0
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.9e-102 376.3 553 61.5
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 3.9e-102 376.3 570 58.6
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.1e-101 374.8 553 60.6
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 5.7e-101 372.5 562 58.9
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.6e-100 370.9 557 59.1
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.8e-100 370.2 547 61.4
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 5.3e-99 365.9 557 60.5
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 2.6e-98 363.6 556 59.4
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.7e-98 362.1 553 61.1
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 5.0e-97 359.4 559 55.5
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 8.5e-97 358.6 558 56.6
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 5.5e-96 355.9 554 63.0
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.1e-91 341.7 463 61.6
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.9e-91 339.0 564 57.6
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 9.1e-91 338.6 596 53.0
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 9.1e-91 338.6 552 59.4
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 5.9e-90 335.9 561 58.3
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.7e-89 334.3 566 54.6
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 2.2e-89 334.0 550 62.0
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 2.9e-89 333.6 562 59.3
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 7.9e-87 325.5 557 59.4
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.4e-86 324.7 586 53.6
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 5.2e-86 322.8 566 51.9
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 2.2e-84 317.4 557 53.7
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 3.7e-84 316.6 471 60.5
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.8e-84 316.2 565 58.9
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 6.3e-84 315.8 553 56.1
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 6.3e-84 315.8 562 53.9
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.9e-80 304.3 552 52.9
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 7.2e-80 302.4 561 56.0
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 7.2e-80 302.4 565 50.6
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.6e-79 301.2 567 53.3
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 2.1e-79 300.8 559 55.8
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 2.7e-79 300.4 580 52.1
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 6.7e-78 295.8 557 54.9
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.3e-76 291.6 556 55.9
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.7e-76 290.0 567 50.1
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 4.8e-76 289.7 575 55.0
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.8e-75 287.7 295 73.9
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 2.4e-75 287.3 605 46.0
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.6e-74 284.6 555 52.6
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.3e-73 281.6 577 47.3
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 7.2e-72 275.8 554 49.3
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 7.2e-72 275.8 589 52.3
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.6e-71 274.6 383 63.2
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.1e-71 274.2 236 70.3
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 3.4e-69 266.9 169 84.0
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.3e-68 265.0 165 84.2
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.6e-66 258.1 394 49.5
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 3.2e-64 250.4 155 84.5
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.5e-56 224.9 180 69.4
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 4.3e-56 223.4 497 47.7
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.0e-53 214.5 160 75.6
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.6e-50 204.9 493 53.3
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.9e-43 181.4 546 35.5
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 5.4e-43 179.9 439 44.9
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.3e-41 175.3 323 51.1
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 2.9e-36 157.5 389 44.7
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 9.5e-32 142.5 289 50.5
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.6e-26 125.2 202 58.4
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.7e-25 121.7 127 64.6
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 2.3e-25 121.3 509 40.5
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 3.0e-25 120.9 86 70.9
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.9e-25 120.6 74 82.4
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 5.1e-25 120.2 109 66.1
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 8.6e-25 119.4 222 55.0
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 1.5e-24 118.6 135 64.4
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.5e-24 118.6 110 67.3
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 6.4e-20 103.2 169 43.8
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 8.4e-20 102.8 110 59.1
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.5e-18 97.4 64 79.7
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 8.7e-17 92.8 103 58.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 9.6e-16 89.4 110 52.7
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 5.8e-13 80.1 58 79.3
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.2e-11 74.3 46 84.8
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-10 72.4 115 49.6
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.7e-10 71.2 86 52.3
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.3e-09 68.2 73 56.2
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.3e-09 68.2 73 56.2
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 1.5e-08 65.5 75 53.3
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 2.1e-07 61.6 158 34.8
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.4e-06 58.2 115 68.7


User provided reference genes

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