Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 4.0e-53 211.1 101 100.0
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 9.4e-18 93.6 47 93.6
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 4.7e-17 91.3 47 89.4
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 7.9e-17 90.5 47 87.2
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 1.4e-16 89.7 47 89.4
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 2.3e-16 89.0 47 87.2
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.0e-16 88.6 47 87.2
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.0e-16 88.6 47 87.2
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 3.9e-16 88.2 47 87.2
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 6.7e-16 87.4 47 85.1
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 6.7e-16 87.4 47 85.1
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 6.7e-16 87.4 47 85.1
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 8.8e-16 87.0 47 85.1
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 8.8e-16 87.0 47 85.1
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 8.8e-16 87.0 46 87.0
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 1.5e-15 86.3 47 85.1
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 1.5e-15 86.3 47 85.1
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 1.5e-15 86.3 47 85.1
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.5e-15 86.3 46 87.0
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 2.0e-15 85.9 47 83.0
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 2.0e-15 85.9 46 84.8
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 2.0e-15 85.9 46 87.0
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 2.0e-15 85.9 46 82.6
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 2.0e-15 85.9 46 84.8
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 2.0e-15 85.9 47 80.9
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 2.6e-15 85.5 47 85.1
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 2.6e-15 85.5 47 78.7
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.6e-15 85.5 52 76.9
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.6e-15 85.5 52 76.9
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 2.6e-15 85.5 46 84.8
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 2.6e-15 85.5 46 84.8
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 2.6e-15 85.5 46 84.8
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.6e-15 85.5 46 84.8
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.6e-15 85.5 46 84.8
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 3.3e-15 85.1 46 84.8
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.3e-15 85.1 47 83.0
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 3.3e-15 85.1 46 84.8
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 3.3e-15 85.1 46 84.8
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 4.4e-15 84.7 47 80.9
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 4.4e-15 84.7 47 83.0
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 5.7e-15 84.3 46 84.8
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 7.4e-15 84.0 46 82.6
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 7.4e-15 84.0 46 82.6
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 7.4e-15 84.0 46 80.4
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 7.4e-15 84.0 46 82.6
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 7.4e-15 84.0 47 80.9
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 7.4e-15 84.0 47 78.7
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 7.4e-15 84.0 46 84.8
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 7.4e-15 84.0 46 84.8
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 9.7e-15 83.6 46 80.4
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 9.7e-15 83.6 47 80.9
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 9.7e-15 83.6 47 78.7
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 9.7e-15 83.6 47 78.7
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 9.7e-15 83.6 47 78.7
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 9.7e-15 83.6 47 78.7
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 9.7e-15 83.6 47 78.7
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 9.7e-15 83.6 47 78.7
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 9.7e-15 83.6 46 80.4
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.3e-14 83.2 46 80.4
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 1.3e-14 83.2 46 80.4
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 1.3e-14 83.2 53 73.6
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.3e-14 83.2 46 80.4
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.3e-14 83.2 46 80.4
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 1.7e-14 82.8 47 80.9
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.7e-14 82.8 45 82.2
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 1.7e-14 82.8 47 78.7
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 2.2e-14 82.4 46 78.3
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 2.2e-14 82.4 45 84.4
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 2.2e-14 82.4 46 80.4
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 2.2e-14 82.4 46 80.4
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 2.2e-14 82.4 46 78.3
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 2.2e-14 82.4 46 78.3
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 2.2e-14 82.4 46 80.4
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 2.2e-14 82.4 45 82.2
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 2.8e-14 82.0 46 78.3
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 2.8e-14 82.0 46 78.3
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 2.8e-14 82.0 46 80.4
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 2.8e-14 82.0 46 80.4
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 2.8e-14 82.0 47 78.7
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 2.8e-14 82.0 46 80.4
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 3.7e-14 81.6 46 80.4
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.7e-14 81.6 47 76.6
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 3.7e-14 81.6 47 76.6
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 3.7e-14 81.6 47 76.6
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 3.7e-14 81.6 47 78.7
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 3.7e-14 81.6 47 76.6
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 4.8e-14 81.3 47 76.6
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 4.8e-14 81.3 47 76.6
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 4.8e-14 81.3 47 76.6
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 4.8e-14 81.3 47 76.6
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 4.8e-14 81.3 47 76.6
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 4.8e-14 81.3 47 76.6
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 4.8e-14 81.3 47 76.6
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 4.8e-14 81.3 47 76.6
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 4.8e-14 81.3 47 76.6
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 4.8e-14 81.3 46 80.4
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 4.8e-14 81.3 47 76.6
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 4.8e-14 81.3 46 80.4
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 4.8e-14 81.3 46 80.4
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 6.3e-14 80.9 47 76.6
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 6.3e-14 80.9 47 76.6
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 6.3e-14 80.9 47 76.6
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 8.2e-14 80.5 47 74.5
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 8.2e-14 80.5 47 74.5
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 8.2e-14 80.5 47 74.5
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 8.2e-14 80.5 47 74.5
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 8.2e-14 80.5 47 74.5
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 8.2e-14 80.5 47 74.5
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 8.2e-14 80.5 47 76.6
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 8.2e-14 80.5 46 78.3
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 8.2e-14 80.5 46 78.3
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 1.1e-13 80.1 47 76.6
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 1.4e-13 79.7 46 73.9
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.4e-13 79.7 47 74.5
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.4e-13 79.7 41 87.8
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 1.4e-13 79.7 47 74.5
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.8e-13 79.3 47 74.5
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 3.1e-13 78.6 47 74.5
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 4.1e-13 78.2 47 74.5
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 4.1e-13 78.2 47 74.5
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 4.1e-13 78.2 47 74.5
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 4.1e-13 78.2 47 74.5
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 5.3e-13 77.8 47 74.5
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 5.3e-13 77.8 46 76.1
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 5.3e-13 77.8 45 77.8
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 7.0e-13 77.4 44 81.8
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 1.2e-12 76.6 47 72.3
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.6e-12 76.3 47 70.2
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.6e-12 76.3 48 72.9
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 2.6e-12 75.5 46 71.7
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 2.6e-12 75.5 46 71.7
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 3.5e-12 75.1 48 72.9
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 5.9e-12 74.3 48 70.8
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 7.7e-12 73.9 70 55.7
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.7e-11 72.8 53 67.9
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 5.0e-11 71.2 48 68.8
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 5.0e-11 71.2 48 68.8
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 2.5e-10 68.9 46 67.4
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 5.5e-10 67.8 42 71.4
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 1.2e-09 66.6 52 61.5
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 1.2e-09 66.6 47 66.0
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 4.7e-09 64.7 44 68.2
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 1.4e-08 63.2 47 61.7
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 4.0e-08 61.6 53 58.5
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 8.8e-08 60.5 48 60.4
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 4.8e-06 54.7 36 75.0


User provided reference genes

Program Settings