Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 4.1e-102 374.8 198 100.0
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 6.6e-76 287.7 199 74.4
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 8.4e-71 270.8 199 69.8
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.0e-68 263.8 201 67.2
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 6.7e-68 261.2 199 67.8
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 1.5e-67 260.0 200 68.5
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 1.5e-67 260.0 199 68.8
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 7.4e-67 257.7 199 66.3
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 9.6e-67 257.3 199 66.3
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 2.1e-66 256.1 200 68.0
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.8e-66 255.8 199 64.8
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 6.2e-66 254.6 200 66.0
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 3.1e-65 252.3 199 67.8
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 6.9e-65 251.1 198 68.2
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 2.0e-64 249.6 198 67.7
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 4.5e-64 248.4 199 65.8
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 5.8e-64 248.1 199 65.8
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 1.0e-63 247.3 200 65.5
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.7e-63 246.5 200 65.0
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 3.8e-63 245.4 200 64.5
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 4.9e-63 245.0 200 64.5
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 1.1e-62 243.8 197 64.5
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 1.9e-62 243.0 199 63.3
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 7.1e-62 241.1 207 63.8
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 9.3e-62 240.7 200 63.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 9.3e-62 240.7 200 63.0
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 2.7e-61 239.2 200 65.5
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 2.7e-61 239.2 191 65.4
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 4.6e-61 238.4 200 63.5
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 6.0e-61 238.0 198 63.6
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 7.9e-61 237.7 198 62.6
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.3e-60 236.9 184 67.9
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.8e-60 236.5 197 61.9
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 3.0e-60 235.7 247 54.3
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.1e-60 235.0 198 62.1
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 8.7e-60 234.2 205 59.0
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 3.3e-59 232.3 198 62.6
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 4.8e-58 228.4 205 58.0
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 1.1e-57 227.3 187 61.5
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.4e-57 226.9 185 61.6
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 6.9e-57 224.6 185 64.3
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.2e-56 223.8 200 61.0
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.5e-56 223.4 184 65.2
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.4e-56 222.2 184 64.7
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 3.8e-55 218.8 198 59.6
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 3.8e-55 218.8 200 59.0
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 5.0e-55 218.4 200 59.0
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 8.4e-55 217.6 199 59.3
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.1e-54 217.2 190 62.6
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 2.5e-54 216.1 196 57.7
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 5.5e-54 214.9 206 55.8
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 5.5e-54 214.9 199 57.8
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.2e-53 213.8 199 56.8
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 1.2e-53 213.8 238 50.4
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 1.6e-53 213.4 199 52.8
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 2.1e-53 213.0 196 59.7
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 2.7e-53 212.6 197 55.3
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 3.5e-53 212.2 199 53.8
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 3.5e-53 212.2 200 56.5
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 4.6e-53 211.8 196 56.1
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 1.0e-52 210.7 196 59.2
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 1.8e-52 209.9 199 57.8
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 2.3e-52 209.5 197 55.3
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 3.9e-52 208.8 199 52.3
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 1.5e-51 206.8 197 53.8
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.5e-51 206.8 184 59.2
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 3.3e-51 205.7 196 54.1
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 3.3e-51 205.7 196 56.1
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 4.3e-51 205.3 184 59.8
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 5.7e-51 204.9 196 56.1
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 5.7e-51 204.9 166 66.3
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 7.4e-51 204.5 196 56.1
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 9.7e-51 204.1 196 53.6
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 1.3e-50 203.8 196 55.6
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 2.2e-50 203.0 184 58.7
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 2.8e-50 202.6 167 65.9
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 2.8e-50 202.6 197 54.8
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 3.7e-50 202.2 196 55.6
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 3.7e-50 202.2 184 57.1
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 3.7e-50 202.2 200 54.0
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 4.8e-50 201.8 196 55.1
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 4.8e-50 201.8 198 52.0
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 1.1e-49 200.7 196 54.1
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 1.1e-49 200.7 200 53.5
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.1e-49 199.1 232 50.4
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 2.0e-48 196.4 155 65.8
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.6e-48 196.1 184 56.0
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 4.5e-48 195.3 181 55.2
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 4.5e-48 195.3 162 65.4
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 5.1e-44 181.8 204 48.0
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 3.3e-43 179.1 184 51.1
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 5.7e-43 178.3 145 64.8
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 1.1e-41 174.1 193 48.2
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 1.4e-41 173.7 199 47.2
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 1.2e-40 170.6 186 52.2
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 5.5e-38 161.8 184 48.4
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 2.7e-37 159.5 158 55.7
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 7.9e-37 157.9 137 56.9
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 1.5e-35 153.7 192 43.8
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 4.4e-35 152.1 121 66.1
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 4.4e-35 152.1 142 54.2
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 4.8e-34 148.7 183 45.4
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 1.4e-33 147.1 161 47.2
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 9.1e-33 144.4 117 66.7
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 9.1e-33 144.4 145 55.9
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.2e-29 134.0 128 52.3
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.5e-27 127.1 107 59.8
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.3e-27 125.9 110 63.6
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 7.5e-27 124.8 145 48.3
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.4e-25 120.6 146 46.6
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 7.0e-25 118.2 89 68.5
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 2.0e-24 116.7 129 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 2.9e-23 112.8 154 41.6
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 5.5e-22 108.6 186 34.9
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 1.2e-21 107.5 190 35.3
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 1.6e-21 107.1 106 52.8
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.1e-21 106.7 84 64.3
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 5.4e-17 92.0 80 56.2
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 2.7e-16 89.7 84 54.8
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 1.9e-14 83.6 61 67.2
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 2.8e-10 69.7 110 38.2
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 4.1e-09 65.9 37 81.1
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 2.7e-08 63.2 57 57.9
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 2.3e-07 60.1 44 61.4
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 6.6e-07 58.5 45 64.4
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 9.5e-06 54.7 76 46.1


User provided reference genes

Program Settings