Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21068 Selenicereus undatus HOM05D001799 ORTHO05D001655 8.6e-79 297.0 155 100.0
AUR62028091 Chenopodium quinoa HOM05D001799 ORTHO05D001655 3.7e-29 132.1 120 50.8
Lj3A893T82 Lonicera japonica HOM05D001799 ORTHO05D001655 6.5e-18 94.7 140 40.7
Peaxi162Scf00912g00142 Petunia axillaris HOM05D001799 ORTHO05D001655 1.1e-17 94.0 110 46.4
EL10Ac3g05164 Beta vulgaris HOM05D001799 ORTHO05D001655 1.9e-17 93.2 107 49.5
Thhalv10015504m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 4.2e-17 92.0 98 48.0
vmacro06449 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 1.2e-16 90.5 142 38.7
AUR62028087 Chenopodium quinoa HOM05D001799 ORTHO05D001655 2.7e-16 89.4 89 52.8
TAR375G0758 Trochodendron aralioides HOM05D001799 ORTHO05D001655 3.5e-16 89.0 141 41.8
arahy.Tifrunner.gnm1.ann1.L3LS3U Arachis hypogaea HOM05D001799 ORTHO05D001655 7.9e-16 87.8 104 46.2
DCAR_010570 Daucus carota HOM05D001799 ORTHO05D001655 7.9e-16 87.8 142 35.9
Ah.13g070840 Amaranthus hybridus HOM05D001799 ORTHO05D001655 1.3e-15 87.0 90 46.7
Dinv29206 Davidia involucrata HOM05D001799 ORTHO05D001655 1.3e-15 87.0 142 39.4
AUR62005983 Chenopodium quinoa HOM05D001799 ORTHO05D001655 1.8e-15 86.7 89 50.6
COL.COLO4_14379 Corchorus olitorius HOM05D001799 ORTHO05D001655 2.3e-15 86.3 151 35.1
AL8G29300 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 5.1e-15 85.1 92 44.6
Nn1g09661 Nelumbo nucifera HOM05D001799 ORTHO05D001655 6.7e-15 84.7 157 36.9
Nn8g39146 Nelumbo nucifera HOM05D001799 ORTHO05D001655 6.7e-15 84.7 157 36.9
Nitab4.5_0000021g0110 Nicotiana tabacum HOM05D001799 ORTHO05D001655 8.7e-15 84.3 130 39.2
CSS0016235 Camellia sinensis var. sinensis HOM05D001799 ORTHO05D001655 1.1e-14 84.0 162 38.9
CAN.G303.35 Capsicum annuum HOM05D001799 ORTHO05D001655 1.1e-14 84.0 130 38.5
AUR62005980 Chenopodium quinoa HOM05D001799 ORTHO05D001655 1.1e-14 84.0 123 38.2
TAR374G0661 Trochodendron aralioides HOM05D001799 ORTHO05D001655 1.1e-14 84.0 140 37.9
AUR62028088 Chenopodium quinoa HOM05D001799 ORTHO05D001655 1.5e-14 83.6 145 35.2
Thecc.03G209600 Theobroma cacao HOM05D001799 ORTHO05D001655 1.5e-14 83.6 135 36.3
SGA_v2.0_scaffold18G08472 Striga asiatica HOM05D001799 ORTHO05D001655 1.9e-14 83.2 133 37.6
Actinidia08702 Actinidia chinensis HOM05D001799 ORTHO05D001655 2.5e-14 82.8 143 37.1
Cc02_g00750 Coffea canephora HOM05D001799 ORTHO05D001655 3.3e-14 82.4 138 37.0
Nitab4.5_0006821g0050 Nicotiana tabacum HOM05D001799 ORTHO05D001655 3.3e-14 82.4 130 37.7
PGSC0003DMG400000581 Solanum tuberosum HOM05D001799 ORTHO05D001655 3.3e-14 82.4 140 36.4
MSTRG.26970 Avicennia marina HOM05D001799 ORTHO05D001655 5.7e-14 81.6 134 36.6
AUR62005982 Chenopodium quinoa HOM05D001799 ORTHO05D001655 5.7e-14 81.6 157 31.2
Hund21067 Selenicereus undatus HOM05D001799 ORTHO05D001655 7.4e-14 81.3 142 36.6
Sopen03g021900 Solanum pennellii HOM05D001799 ORTHO05D001655 7.4e-14 81.3 126 38.1
MD07G1300600 Malus domestica HOM05D001799 ORTHO05D001655 1.3e-13 80.5 137 37.2
Solyc03g080170.3 Solanum lycopersicum HOM05D001799 ORTHO05D001655 1.3e-13 80.5 126 38.1
arahy.Tifrunner.gnm1.ann1.43FH2R Arachis hypogaea HOM05D001799 ORTHO05D001655 1.6e-13 80.1 111 43.2
BcaB01g04279 Brassica carinata HOM05D001799 ORTHO05D001655 2.2e-13 79.7 120 40.8
QL09p006905 Quercus lobata HOM05D001799 ORTHO05D001655 2.8e-13 79.3 164 34.8
vmacro10165 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 3.7e-13 79.0 132 37.1
AL8G29290 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 4.8e-13 78.6 138 34.8
Cfa016150 Carpinus fangiana HOM05D001799 ORTHO05D001655 6.3e-13 78.2 149 34.9
Cfa016149 Carpinus fangiana HOM05D000001 ORTHO05D001655 2.4e-12 76.3 134 35.8
DCAR_014565 Daucus carota HOM05D001799 ORTHO05D001655 2.4e-12 76.3 134 35.8
Hund21066 Selenicereus undatus HOM05D001799 ORTHO05D001655 2.4e-12 76.3 140 37.9
CANSAT21G2156 Cannabis sativa HOM05D001799 ORTHO05D001655 3.1e-12 75.9 142 33.1
MD07G1211900 Malus domestica HOM05D001799 ORTHO05D001655 3.1e-12 75.9 126 35.7
MD07G1300800 Malus domestica HOM05D001799 ORTHO05D001655 3.1e-12 75.9 147 36.1
QL09p006902 Quercus lobata HOM05D001799 ORTHO05D001655 3.1e-12 75.9 153 34.6
Gohir.A11G016800 Gossypium hirsutum HOM05D001799 ORTHO05D001655 4.1e-12 75.5 122 36.1
Gohir.D11G016600 Gossypium hirsutum HOM05D001799 ORTHO05D001655 4.1e-12 75.5 122 36.1
Gorai.007G017400 Gossypium raimondii HOM05D001799 ORTHO05D001655 4.1e-12 75.5 122 36.1
MD01G1229200 Malus domestica HOM05D001799 ORTHO05D001655 5.3e-12 75.1 133 36.8
SHI02275 Sapria himalayana HOM05D001799 ORTHO05D001655 5.3e-12 75.1 150 34.7
A03p57450 Brassica napus HOM05D001799 ORTHO05D001655 6.9e-12 74.7 154 35.1
HanXRQChr04g0111531 Helianthus annuus HOM05D001799 ORTHO05D001655 9.0e-12 74.3 152 30.9
BraA03t14813Z Brassica rapa HOM05D001799 ORTHO05D001655 1.2e-11 73.9 134 35.8
ECA232G3612 Erigeron canadensis HOM05D000001 ORTHO05D001655 1.2e-11 73.9 129 33.3
Migut.F00143 Erythranthe guttata HOM05D001799 ORTHO05D001655 1.2e-11 73.9 107 36.4
vmacro06448 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 1.2e-11 73.9 120 40.0
Ciclev10022593m.g Citrus clementina HOM05D001799 ORTHO05D001655 1.5e-11 73.6 135 37.0
Haze_00305 Corylus avellana HOM05D000001 ORTHO05D001653 1.5e-11 73.6 135 36.3
Oeu061036.1 Olea europaea HOM05D001799 ORTHO05D001655 1.5e-11 73.6 130 32.3
Rhsim09G0210200 Rhododendron simsii HOM05D001799 ORTHO05D001655 1.5e-11 73.6 129 36.4
Duzib205G0886 Durio zibethinus HOM05D001799 ORTHO05D001655 2.0e-11 73.2 140 33.6
Lsat_1_v5_gn_0_9841 Lactuca sativa HOM05D001799 ORTHO05D001655 2.0e-11 73.2 145 31.7
THA.LOC104811886 Tarenaya hassleriana HOM05D001799 ORTHO05D001655 2.0e-11 73.2 153 28.1
AUR62028090 Chenopodium quinoa HOM05D001799 ORTHO05D001655 2.6e-11 72.8 147 32.7
SalBow4G2285 Salvia bowleyana HOM05D001799 ORTHO05D001655 2.6e-11 72.8 132 34.1
SalBow4G2945 Salvia bowleyana HOM05D001799 ORTHO05D001655 2.6e-11 72.8 132 34.1
SGA_v2.0_scaffold44G16852 Striga asiatica HOM05D001799 ORTHO05D001655 2.6e-11 72.8 136 31.6
Ah.07g204490 Amaranthus hybridus HOM05D001799 ORTHO05D001655 3.4e-11 72.4 129 38.0
Ca_16784_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 3.4e-11 72.4 130 36.2
Ca_16800_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 3.4e-11 72.4 130 36.2
Thhalv10026379m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 4.5e-11 72.0 131 35.1
GSVIVG01038656001 Vitis vinifera HOM05D001799 ORTHO05D001655 4.5e-11 72.0 173 31.8
C07p55660 Brassica napus HOM05D001799 ORTHO05D001655 5.9e-11 71.6 154 33.8
BolC7t46046H Brassica oleracea HOM05D001799 ORTHO05D001655 5.9e-11 71.6 154 33.8
Potri.015G003200 Populus trichocarpa HOM05D001799 ORTHO05D001655 5.9e-11 71.6 141 31.9
TPR.G39833 Trifolium pratense HOM05D001799 ORTHO05D001655 5.9e-11 71.6 153 32.7
arahy.Tifrunner.gnm1.ann1.A9XWZ4 Arachis hypogaea HOM05D001799 ORTHO05D001655 7.7e-11 71.2 117 37.6
CARHR267350 Cardamine hirsuta HOM05D001799 ORTHO05D001655 7.7e-11 71.2 135 33.3
Potri.012G006501 Populus trichocarpa HOM05D001799 ORTHO05D001655 7.7e-11 71.2 154 32.5
Rhsim03G0216200 Rhododendron simsii HOM05D001799 ORTHO05D001655 7.7e-11 71.2 160 33.8
Sp7g25630 Schrenkiella parvula HOM05D001799 ORTHO05D001655 7.7e-11 71.2 131 34.4
unitig_0.g2441 Utricularia gibba HOM05D001799 ORTHO05D001655 7.7e-11 71.2 146 32.9
AT5G54148 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 1.7e-10 70.1 108 36.1
AUR62028089 Chenopodium quinoa HOM05D001799 ORTHO05D001655 1.7e-10 70.1 140 35.0
Sabra15G0002100 Salix brachista HOM05D001799 ORTHO05D001655 1.7e-10 70.1 141 32.6
CiPaw.06G040500 Carya illinoinensis HOM05D001799 ORTHO05D001655 2.2e-10 69.7 145 34.5
A10p11470 Brassica napus HOM05D001799 ORTHO05D001655 2.9e-10 69.3 122 35.2
BraA10t43241Z Brassica rapa HOM05D001799 ORTHO05D001655 2.9e-10 69.3 122 35.2
arahy.Tifrunner.gnm1.ann1.HAI2J2 Arachis hypogaea HOM05D001799 ORTHO05D001655 3.8e-10 68.9 133 37.6
BcaNung01644 Brassica carinata HOM05D001799 ORTHO05D001655 3.8e-10 68.9 131 33.6
Sabra12G0008400 Salix brachista HOM05D001799 ORTHO05D001655 6.5e-10 68.2 140 31.4
Sed0005863 Sechium edule HOM05D001799 ORTHO05D001655 6.5e-10 68.2 137 34.3
Manes.01G043800 Manihot esculenta HOM05D001799 ORTHO05D001655 8.5e-10 67.8 145 33.1
Psat5g071400 Pisum sativum HOM05D001799 ORTHO05D001655 8.5e-10 67.8 132 31.8
Aa31LG3G9870 Aethionema arabicum HOM05D001799 ORTHO05D001655 1.1e-09 67.4 140 31.4
AT5G54150 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 1.1e-09 67.4 132 35.6
BcaC04g20368 Brassica carinata HOM05D001799 ORTHO05D001655 1.1e-09 67.4 131 34.4
BcaC04g20370 Brassica carinata HOM05D001799 ORTHO05D001655 1.1e-09 67.4 131 34.4
BolC9t57311H Brassica oleracea HOM05D001799 ORTHO05D001655 1.1e-09 67.4 131 34.4
AT4G27660 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 1.4e-09 67.0 132 32.6
BcaC06g32668 Brassica carinata HOM05D001799 ORTHO05D001655 1.4e-09 67.0 126 32.5
C09p44430 Brassica napus HOM05D001799 ORTHO05D001655 1.4e-09 67.0 120 34.2
Ah.13g070830 Amaranthus hybridus HOM05D001799 ORTHO05D001655 1.9e-09 66.6 145 30.3
Glyma.04G227500 Glycine max HOM05D001799 ORTHO05D001655 1.9e-09 66.6 112 36.6
PGR004G1887 Punica granatum HOM05D001799 ORTHO05D001655 2.5e-09 66.2 112 31.2
AL7G25010 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 3.2e-09 65.9 128 33.6
Lj1g0012845 Lotus japonicus HOM05D001799 ORTHO05D001655 3.2e-09 65.9 110 33.6
Atru.chr12.2450 Acer truncatum HOM05D001799 ORTHO05D001655 4.2e-09 65.5 135 31.9
Lalb_Chr08g0239541 Lupinus albus HOM05D001799 ORTHO05D001655 7.2e-09 64.7 135 33.3
Sc19g0000540 Simmondsia chinensis HOM05D001799 ORTHO05D001655 7.2e-09 64.7 139 34.5
C09p44410 Brassica napus HOM05D001799 ORTHO05D001655 9.4e-09 64.3 102 37.3
Carub.0008s1445 Capsella rubella HOM05D001799 ORTHO05D001655 9.4e-09 64.3 131 33.6
Lalb_Chr11g0067451 Lupinus albus HOM05D001799 ORTHO05D001655 9.4e-09 64.3 113 36.3
RcHm_v2.0_Chr1g0382971 Rosa chinensis HOM05D001799 ORTHO05D001655 9.4e-09 64.3 131 33.6
BcaC09g50556 Brassica carinata HOM05D001799 ORTHO05D001655 1.2e-08 63.9 132 32.6
C01p23980 Brassica napus HOM05D001799 ORTHO05D001655 1.2e-08 63.9 132 32.6
Carub.0007s1316 Capsella rubella HOM05D001799 ORTHO05D001655 1.2e-08 63.9 157 33.8
Gohir.A12G246150 Gossypium hirsutum HOM05D001799 ORTHO05D001655 1.2e-08 63.9 98 32.7
Medtr3g092930 Medicago truncatula HOM05D001799 ORTHO05D001655 1.2e-08 63.9 107 34.6
EL10Ac3g05161 Beta vulgaris HOM05D001799 ORTHO05D001655 1.6e-08 63.5 86 45.3
A01p19050 Brassica napus HOM05D001799 ORTHO05D001655 1.6e-08 63.5 132 32.6
BraA01t01848Z Brassica rapa HOM05D001799 ORTHO05D001655 1.6e-08 63.5 132 32.6
Ca_16785_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 1.6e-08 63.5 131 32.8
Ca_16801_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 1.6e-08 63.5 131 32.8
TPR.G33369 Trifolium pratense HOM05D001799 ORTHO05D001655 1.6e-08 63.5 127 32.3
EL10Ac3g05163 Beta vulgaris HOM05D001799 ORTHO05D001655 2.1e-08 63.2 178 27.0
BolC1t02348H Brassica oleracea HOM05D001799 ORTHO05D001655 2.7e-08 62.8 132 31.8
AUR62005979 Chenopodium quinoa HOM05D001799 ORTHO05D001655 2.7e-08 62.8 125 30.4
Prupe.2G319800 Prunus persica HOM05D001799 ORTHO05D001655 4.6e-08 62.0 92 40.2
Atru.chr12.2490 Acer truncatum HOM05D001799 ORTHO05D001655 6.1e-08 61.6 125 29.6
AUR62005981 Chenopodium quinoa HOM05D001799 ORTHO05D001655 6.1e-08 61.6 169 30.2
Atru.chr12.2449 Acer truncatum HOM05D001799 ORTHO05D001655 7.9e-08 61.2 125 29.6
DCAR_012111 Daucus carota HOM05D001799 ORTHO05D001655 1.0e-07 60.8 138 29.7
PSO210G5694 Papaver somniferum HOM05D001799 ORTHO05D001655 1.4e-07 60.5 144 29.9
FvH4_7g33000 Fragaria vesca HOM05D001799 ORTHO05D001655 1.8e-07 60.1 141 29.8
FAN10G2261 Fragaria x ananassa HOM05D001799 ORTHO05D001655 1.8e-07 60.1 127 31.5
FAN10G3955 Fragaria x ananassa HOM05D001799 ORTHO05D001655 1.8e-07 60.1 127 31.5
PSO210G7307 Papaver somniferum HOM05D001799 ORTHO05D001655 1.8e-07 60.1 144 30.6
EL10Ac3g05162 Beta vulgaris HOM05D001799 ORTHO05D001655 2.3e-07 59.7 138 28.3
Glyma.04G227600 Glycine max HOM05D001799 ORTHO05D001655 2.3e-07 59.7 140 31.4
Thhalv10015984m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 3.0e-07 59.3 101 34.7
Medtr3g092960 Medicago truncatula HOM05D001799 ORTHO05D001655 5.1e-07 58.5 147 29.3
FAN01G2762 Fragaria x ananassa HOM05D001799 ORTHO05D001655 6.7e-07 58.2 127 31.5
Gohir.D12G246800 Gossypium hirsutum HOM05D001799 ORTHO05D001655 8.8e-07 57.8 97 33.0
FAN03G0617 Fragaria x ananassa HOM05D001799 ORTHO05D001655 1.1e-06 57.4 127 31.5
Gorai.008G264800 Gossypium raimondii HOM05D001799 ORTHO05D001655 1.5e-06 57.0 116 31.9
Sp6g16200 Schrenkiella parvula HOM05D001799 ORTHO05D001655 1.5e-06 57.0 71 43.7
Medtr7g098950 Medicago truncatula HOM05D001799 ORTHO05D001655 2.0e-06 56.6 61 47.5
Atru.chr1.2423 Acer truncatum HOM05D001799 ORTHO05D001655 3.3e-06 55.8 100 34.0
Duzib138G0086 Durio zibethinus HOM05D001799 ORTHO05D001655 3.3e-06 55.8 88 37.5
MBI04_g22926_MAGBIO Magnolia biondii HOM05D001799 ORTHO05D001655 3.3e-06 55.8 117 32.5
Medtr7g099000 Medicago truncatula HOM05D001799 ORTHO05D001655 3.3e-06 55.8 61 47.5
Atru.chr12.2492 Acer truncatum HOM05D001799 ORTHO05D001655 4.3e-06 55.5 117 30.8
Os10g0573300 Oryza sativa ssp. japonica HOM05D001799 ORTHO05D001655 4.3e-06 55.5 111 30.6
BcaB08g35772 Brassica carinata HOM05D001799 ORTHO05D001655 5.7e-06 55.1 148 31.1
A03p14790 Brassica napus HOM05D001799 ORTHO05D001655 5.7e-06 55.1 166 25.9
BraA03t10772Z Brassica rapa HOM05D001799 ORTHO05D001655 5.7e-06 55.1 166 25.9
Psat3g052240 Pisum sativum HOM05D001799 ORTHO05D001655 9.7e-06 54.3 60 46.7


User provided reference genes

Program Settings