Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 1.3e-230 802.7 414 100.0
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 3.4e-98 362.8 436 54.8
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 2.8e-84 316.6 427 51.5
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 9.6e-77 291.6 383 50.9
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 4.7e-47 193.0 439 36.9
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.0e-45 187.6 436 36.9
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.2e-44 184.1 439 36.2
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 3.0e-38 163.7 439 33.7
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 2.6e-37 160.6 438 34.2
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 2.6e-37 160.6 371 36.7
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 2.2e-36 157.5 421 33.0
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.4e-35 154.1 453 32.7
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 3.5e-34 150.2 389 33.7
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 8.5e-33 145.6 451 34.8
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 1.9e-32 144.4 430 33.7
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 1.9e-32 144.4 464 32.5
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 4.2e-32 143.3 471 31.8
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 6.1e-31 139.4 430 33.3
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.0e-30 138.7 464 33.0
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.4e-30 138.3 438 32.6
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 5.2e-30 136.3 437 32.0
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 5.2e-30 136.3 450 33.3
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 2.0e-29 134.4 461 30.8
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.3e-28 131.7 413 33.2
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.1e-27 127.1 417 31.7
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 7.7e-26 122.5 425 31.1
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 7.7e-26 122.5 437 31.1
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.1e-24 118.6 424 30.4
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 1.5e-24 118.2 443 31.8
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 1.5e-24 118.2 454 31.3
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 5.5e-24 116.3 433 30.7
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.6e-23 114.8 420 31.0
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 6.1e-23 112.8 469 29.9
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 1.4e-22 111.7 429 29.6
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 1.4e-22 111.7 299 33.8
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 1.4e-22 111.7 434 30.9
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.3e-22 110.9 427 28.3
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 2.6e-21 107.5 400 29.8
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 3.7e-20 103.6 457 29.1
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 8.3e-20 102.4 321 32.4
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 1.4e-19 101.7 325 32.6
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 1.8e-19 101.3 290 32.4
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 9.2e-19 99.0 396 29.3
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.2e-18 98.6 433 30.7
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.0e-18 97.8 414 28.3
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 3.5e-18 97.1 421 26.6
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 5.9e-18 96.3 434 26.7
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 7.8e-18 95.9 400 29.5
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 7.8e-18 95.9 454 28.6
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.3e-17 94.4 320 31.2
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 2.9e-17 94.0 407 28.5
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 5.0e-17 93.2 437 29.5
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 1.5e-16 91.7 314 33.4
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.3e-16 90.5 414 28.5
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 4.3e-16 90.1 450 27.6
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 7.3e-16 89.4 448 26.6
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.2e-15 88.6 413 25.9
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 4.7e-15 86.7 423 27.9
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 6.1e-15 86.3 422 26.5
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 6.1e-15 86.3 423 28.1
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 6.1e-15 86.3 443 26.4
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 8.0e-15 85.9 289 31.8
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.0e-14 85.5 402 27.6
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.0e-14 85.5 357 28.9
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.0e-14 85.5 424 26.9
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 1.0e-14 85.5 435 29.4
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 2.3e-14 84.3 429 27.7
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 4.0e-14 83.6 412 26.7
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 4.0e-14 83.6 409 25.7
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 6.8e-14 82.8 335 31.6
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 6.8e-14 82.8 414 27.1
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 1.2e-13 82.0 286 28.7
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 2.0e-13 81.3 403 28.3
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 2.6e-13 80.9 409 26.7
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 2.6e-13 80.9 436 26.4
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 5.7e-13 79.7 306 31.4
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 9.8e-13 79.0 403 28.0
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 9.8e-13 79.0 273 31.1
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 1.3e-12 78.6 424 27.6
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 1.3e-12 78.6 439 26.9
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 2.2e-12 77.8 452 27.2
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.2e-12 77.8 455 27.0
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.2e-12 77.8 425 25.6
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.9e-12 77.4 270 31.1
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.7e-12 77.0 431 25.1
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 4.9e-12 76.6 304 31.6
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 1.1e-11 75.5 467 26.8
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 1.4e-11 75.1 417 27.1
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 1.8e-11 74.7 316 30.7
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 2.4e-11 74.3 423 27.9
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 3.2e-11 73.9 129 41.1
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 7.0e-11 72.8 419 24.6
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 9.2e-11 72.4 284 30.6
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 9.2e-11 72.4 169 32.0
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 1.2e-10 72.0 283 31.1
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 1.2e-10 72.0 237 32.1
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 2.7e-10 70.9 410 26.3
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.6e-10 70.1 458 24.9
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 4.6e-10 70.1 435 23.7
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 7.8e-10 69.3 287 30.7
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.0e-09 68.9 397 24.9
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 1.0e-09 68.9 408 25.5
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.3e-09 68.6 270 31.1
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.7e-09 68.2 273 31.9
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 2.3e-09 67.8 399 24.8
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 3.0e-09 67.4 400 25.2
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 5.0e-09 66.6 265 30.2
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.0e-09 66.6 436 24.3
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 6.6e-09 66.2 151 35.1
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 6.6e-09 66.2 463 25.9
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.6e-09 65.9 439 23.7
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 1.5e-08 65.1 315 26.0
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 2.5e-08 64.3 394 25.4
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 2.5e-08 64.3 342 26.6
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 3.3e-08 63.9 442 24.9
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 3.3e-08 63.9 142 37.3
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 4.3e-08 63.5 121 35.5
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 4.3e-08 63.5 133 36.1
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.6e-08 63.2 435 22.8
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 5.6e-08 63.2 454 25.8
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 7.3e-08 62.8 420 24.5
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.2e-07 62.0 292 29.1
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 1.2e-07 62.0 292 29.1
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 1.6e-07 61.6 166 29.5
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 1.6e-07 61.6 112 38.4
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.6e-07 61.6 250 26.8
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.8e-07 60.8 290 26.2
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 2.8e-07 60.8 428 27.8
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 2.8e-07 60.8 427 24.1
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 3.6e-07 60.5 411 23.4
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 4.7e-07 60.1 335 26.9
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 4.7e-07 60.1 335 26.9
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 8.0e-07 59.3 269 31.2
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 8.0e-07 59.3 279 27.2
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 1.4e-06 58.5 431 25.1
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 1.4e-06 58.5 426 25.4
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 2.3e-06 57.8 408 24.3
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 3.1e-06 57.4 428 26.6
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 3.1e-06 57.4 110 38.2
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 4.0e-06 57.0 391 25.6
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 4.0e-06 57.0 459 25.9
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.2e-06 56.6 359 24.8
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 5.2e-06 56.6 410 24.9
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 6.8e-06 56.2 441 23.4
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 6.8e-06 56.2 338 25.4
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 6.8e-06 56.2 412 24.0
MSTRG.12680 Avicennia marina HOM05D003726 ORTHO05D003520 8.9e-06 55.8 403 26.1


User provided reference genes

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