Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20972 Selenicereus undatus HOM05D003116 ORTHO05D382736 2.2e-54 215.3 104 100.0
Atru.chr8.1701 Acer truncatum HOM05D003116 ORTHO05D003619 6.9e-16 87.4 77 51.9
Peaxi162Scf00110g00082 Petunia axillaris HOM05D003116 ORTHO05D003619 1.7e-14 82.8 79 48.1
Lalb_Chr25g0288771 Lupinus albus HOM05D003116 ORTHO05D003619 1.4e-13 79.7 84 46.4
Nitab4.5_0000132g0470 Nicotiana tabacum HOM05D003116 ORTHO05D003619 2.5e-13 79.0 79 50.6
Thecc.05G075800 Theobroma cacao HOM05D003116 ORTHO05D003619 4.2e-13 78.2 86 43.0
TAR625G1207 Trochodendron aralioides HOM05D003116 ORTHO05D003619 9.4e-13 77.0 85 47.1
arahy.Tifrunner.gnm1.ann1.9H48GU Arachis hypogaea HOM05D003116 ORTHO05D085597 1.2e-12 76.6 76 48.7
TAR636G1518 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.6e-12 76.3 85 47.1
GSVIVG01033716001 Vitis vinifera HOM05D003116 ORTHO05D003619 1.6e-12 76.3 102 41.2
MBI11_g04280_MAGBIO Magnolia biondii HOM05D003116 ORTHO05D003619 2.1e-12 75.9 91 45.1
arahy.Tifrunner.gnm1.ann1.UXIK5Z Arachis hypogaea HOM05D003116 ORTHO05D003619 2.7e-12 75.5 74 48.6
Aqoxy5G00402 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 4.6e-12 74.7 71 50.7
TAR636G1363 Trochodendron aralioides HOM05D003116 ORTHO05D003619 4.6e-12 74.7 85 45.9
DCAR_023104 Daucus carota HOM05D003116 ORTHO05D003619 7.9e-12 73.9 86 43.0
Nitab4.5_0009004g0010 Nicotiana tabacum HOM05D003116 ORTHO05D003619 7.9e-12 73.9 82 46.3
Atru.chr12.2147 Acer truncatum HOM05D003116 ORTHO05D003619 1.0e-11 73.6 97 41.2
arahy.Tifrunner.gnm1.ann1.PEQF49 Arachis hypogaea HOM05D000048 ORTHO05D003619 1.0e-11 73.6 74 47.3
CSS0019916 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 1.4e-11 73.2 82 45.1
Ciclev10023555m.g Citrus clementina HOM05D003116 ORTHO05D003619 1.4e-11 73.2 102 41.2
Nitab4.5_0007901g0020 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.4e-11 73.2 82 45.1
ECA233G1402 Erigeron canadensis HOM05D003116 ORTHO05D003619 1.8e-11 72.8 82 43.9
Phvul.001G183700 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 1.8e-11 72.8 75 46.7
Lsat_1_v5_gn_8_2981 Lactuca sativa HOM05D003116 ORTHO05D003619 2.3e-11 72.4 84 42.9
VMungo1383G1045 Vigna mungo HOM05D003116 ORTHO05D003619 2.3e-11 72.4 93 41.9
Glyma.19G188500 Glycine max HOM05D003116 ORTHO05D003619 3.0e-11 72.0 85 42.4
Dinv36343 Davidia involucrata HOM05D003116 ORTHO05D003619 3.9e-11 71.6 84 45.2
FAN05G2101 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.9e-11 71.6 84 41.7
TAR636G0211 Trochodendron aralioides HOM05D003116 ORTHO05D003619 3.9e-11 71.6 73 46.6
arahy.Tifrunner.gnm1.ann1.3K81QB Arachis hypogaea HOM05D003116 ORTHO05D003619 5.1e-11 71.2 70 48.6
arahy.Tifrunner.gnm1.ann1.T6DYUJ Arachis hypogaea HOM05D003116 ORTHO05D003619 5.1e-11 71.2 70 48.6
Manes.08G104900 Manihot esculenta HOM05D003116 ORTHO05D003619 5.1e-11 71.2 84 42.9
PGSC0003DMG400028274 Solanum tuberosum HOM05D003116 ORTHO05D003619 5.1e-11 71.2 106 40.6
SGA_v2.0_scaffold7G04085 Striga asiatica HOM05D003116 ORTHO05D003619 5.1e-11 71.2 82 42.7
CDE02G2540 Ceratophyllum demersum HOM05D003116 ORTHO05D003619 6.7e-11 70.9 87 42.5
Cc02_g09220 Coffea canephora HOM05D003116 ORTHO05D003619 6.7e-11 70.9 82 45.1
Oeu033264.1 Olea europaea HOM05D003116 ORTHO05D003619 6.7e-11 70.9 84 42.9
Os04g0659900 Oryza sativa ssp. japonica HOM05D003116 ORTHO05D003619 6.7e-11 70.9 73 45.2
SalBow8G0641 Salvia bowleyana HOM05D003116 ORTHO05D003619 6.7e-11 70.9 84 42.9
Solyc04g009810.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 6.7e-11 70.9 81 44.4
Sopen04g004940 Solanum pennellii HOM05D003116 ORTHO05D003619 6.7e-11 70.9 81 44.4
Eucgr.B01382 Eucalyptus grandis HOM05D003116 ORTHO05D003619 8.8e-11 70.5 95 40.0
FvH4_6g17270 Fragaria vesca HOM05D003116 ORTHO05D003619 8.8e-11 70.5 84 41.7
HanXRQChr05g0156871 Helianthus annuus HOM05D003116 ORTHO05D003619 8.8e-11 70.5 82 43.9
Psat3g038280 Pisum sativum HOM05D003116 ORTHO05D003619 8.8e-11 70.5 84 42.9
PGSC0003DMG400025436 Solanum tuberosum HOM05D003116 ORTHO05D003619 8.8e-11 70.5 82 43.9
vmacro10396 Vaccinium macrocarpon HOM05D003116 ORTHO05D003619 8.8e-11 70.5 87 41.4
Dinv37361 Davidia involucrata HOM05D003116 ORTHO05D003619 1.1e-10 70.1 96 37.5
FAN05G5198 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.1e-10 70.1 84 40.5
Mapoly0014s0040 Marchantia polymorpha HOM05D003116 ORTHO05D003619 1.1e-10 70.1 70 48.6
GSVIVG01019146001 Vitis vinifera HOM05D003116 ORTHO05D003619 1.1e-10 70.1 89 41.6
Nn3g20158 Nelumbo nucifera HOM05D003116 ORTHO05D003619 1.5e-10 69.7 82 42.7
ATR0609G064 Amborella trichopoda HOM05D003116 ORTHO05D003619 2.0e-10 69.3 84 45.2
Migut.F01553 Erythranthe guttata HOM05D003116 ORTHO05D003619 2.0e-10 69.3 81 43.2
Hma1.2p1_0171F.1_g075610 Hydrangea macrophylla HOM05D003116 ORTHO05D003619 2.0e-10 69.3 73 46.6
MSTRG.9020 Avicennia marina HOM05D003116 ORTHO05D003619 3.3e-10 68.6 82 41.5
AUR62036544 Chenopodium quinoa HOM05D003116 ORTHO05D003619 3.3e-10 68.6 84 41.7
TPR.G14663 Trifolium pratense HOM05D003116 ORTHO05D003619 3.3e-10 68.6 85 42.4
TWI14G0774 Tripterygium wilfordii HOM05D003116 ORTHO05D003619 3.3e-10 68.6 95 40.0
TAR636G2277 Trochodendron aralioides HOM05D003116 ORTHO05D003619 3.3e-10 68.6 87 43.7
Thhalv10025473m.g Eutrema salsugineum HOM05D003116 ORTHO05D003619 4.3e-10 68.2 84 44.0
Medtr1g078400 Medicago truncatula HOM05D003116 ORTHO05D003619 4.3e-10 68.2 96 38.5
Medtr7g102760 Medicago truncatula HOM05D003116 ORTHO05D003619 4.3e-10 68.2 84 44.0
Psat6g052120 Pisum sativum HOM05D003116 ORTHO05D003619 4.3e-10 68.2 96 38.5
Actinidia38911 Actinidia chinensis HOM05D003116 ORTHO05D003619 5.7e-10 67.8 86 40.7
Actinidia39860 Actinidia chinensis HOM05D003116 ORTHO05D003619 5.7e-10 67.8 85 36.5
CSS0019586 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 5.7e-10 67.8 85 38.8
AUR62000365 Chenopodium quinoa HOM05D003116 ORTHO05D003619 5.7e-10 67.8 82 41.5
Duzib128G0562 Durio zibethinus HOM05D003116 ORTHO05D003619 5.7e-10 67.8 84 41.7
PGR119G1776 Punica granatum HOM05D003116 ORTHO05D003619 5.7e-10 67.8 82 41.5
THA.LOC104821795 Tarenaya hassleriana HOM05D003116 ORTHO05D003619 5.7e-10 67.8 87 39.1
ATR0743G097 Amborella trichopoda HOM05D003116 ORTHO05D003619 7.4e-10 67.4 95 43.2
arahy.Tifrunner.gnm1.ann1.U29Z63 Arachis hypogaea HOM05D003116 ORTHO05D003619 7.4e-10 67.4 69 46.4
EL10Ac4g09413 Beta vulgaris HOM05D003116 ORTHO05D003619 7.4e-10 67.4 71 46.5
Hund07322 Selenicereus undatus HOM05D003116 ORTHO05D003619 7.4e-10 67.4 82 42.7
CSS0045595 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 9.7e-10 67.0 85 37.6
CAN.G541.24 Capsicum annuum HOM05D003116 ORTHO05D003619 9.7e-10 67.0 79 36.7
Duzib177G0648 Durio zibethinus HOM05D003116 ORTHO05D003619 9.7e-10 67.0 84 40.5
TPR.G14646 Trifolium pratense HOM05D003116 ORTHO05D003619 9.7e-10 67.0 85 41.2
HPP92_011793 Vanilla planifolia HOM05D003116 ORTHO05D003619 9.7e-10 67.0 74 44.6
BcaNung01649 Brassica carinata HOM05D003116 ORTHO05D003619 1.3e-09 66.6 84 42.9
A01p18940 Brassica napus HOM05D003116 ORTHO05D003619 1.3e-09 66.6 84 42.9
CARHR235350 Cardamine hirsuta HOM05D003116 ORTHO05D003619 1.3e-09 66.6 84 42.9
AUR62006711 Chenopodium quinoa HOM05D003116 ORTHO05D003619 1.3e-09 66.6 82 41.5
AUR62006712 Chenopodium quinoa HOM05D003116 ORTHO05D003619 1.3e-09 66.6 82 41.5
Lj1g0028191 Lotus japonicus HOM05D003116 ORTHO05D003619 1.3e-09 66.6 85 41.2
PSO357G0261 Papaver somniferum HOM05D003116 ORTHO05D003619 1.3e-09 66.6 85 37.6
Sc25g0001710 Simmondsia chinensis HOM05D003116 ORTHO05D003619 1.3e-09 66.6 82 41.5
AagrBONN_evm.TU.Sc2ySwM_344.2897 Anthoceros agrestis HOM05D003116 ORTHO05D003619 1.7e-09 66.2 72 43.1
EL10Ac1g01549 Beta vulgaris HOM05D003116 ORTHO05D003619 1.7e-09 66.2 71 45.1
Ca_09971_v3 Cicer arietinum L. HOM05D003116 ORTHO05D003619 1.7e-09 66.2 96 39.6
Gohir.A04G068200 Gossypium hirsutum HOM05D003116 ORTHO05D003619 1.7e-09 66.2 95 35.8
Lj5g0010554 Lotus japonicus HOM05D003116 ORTHO05D003619 1.7e-09 66.2 96 41.7
Prupe.6G358700 Prunus persica HOM05D003116 ORTHO05D003619 1.7e-09 66.2 85 42.4
BcaC06g32676 Brassica carinata HOM05D003116 ORTHO05D003619 2.2e-09 65.9 84 41.7
ClCG11G007480 Citrullus lanatus HOM05D003116 ORTHO05D003619 2.2e-09 65.9 96 39.6
Lalb_Chr06g0168431 Lupinus albus HOM05D003116 ORTHO05D003619 2.2e-09 65.9 96 41.7
Thecc.05G204800 Theobroma cacao HOM05D003116 ORTHO05D003619 2.2e-09 65.9 84 39.3
Zm00001eb067580 Zea mays HOM05D003116 ORTHO05D003619 2.2e-09 65.9 73 43.8
A03p57410 Brassica napus HOM05D003116 ORTHO05D003619 2.8e-09 65.5 84 41.7
C07p55620 Brassica napus HOM05D003116 ORTHO05D003619 2.8e-09 65.5 84 41.7
Ciclev10013675m.g Citrus clementina HOM05D003116 ORTHO05D003619 2.8e-09 65.5 84 41.7
CsaV3_2G010350 Cucumis sativus L. HOM05D003116 ORTHO05D003619 2.8e-09 65.5 96 39.6
Gohir.D08G244300 Gossypium hirsutum HOM05D003116 ORTHO05D003619 2.8e-09 65.5 84 39.3
Gorai.004G260600 Gossypium raimondii HOM05D003116 ORTHO05D003619 2.8e-09 65.5 84 39.3
Sp7g25620 Schrenkiella parvula HOM05D003116 ORTHO05D003619 2.8e-09 65.5 84 42.9
arahy.Tifrunner.gnm1.ann1.W3HBVG Arachis hypogaea HOM05D003116 ORTHO05D003619 3.7e-09 65.1 91 38.5
COL.COLO4_22257 Corchorus olitorius HOM05D003116 ORTHO05D003619 3.7e-09 65.1 95 36.8
Peaxi162Scf00135g01111 Petunia axillaris HOM05D003116 ORTHO05D003619 3.7e-09 65.1 82 40.2
Ah.13g070600 Amaranthus hybridus HOM05D003116 ORTHO05D003619 4.8e-09 64.7 82 42.7
AL7G25070 Arabidopsis lyrata HOM05D003116 ORTHO05D003619 4.8e-09 64.7 84 41.7
AT4G27650 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 4.8e-09 64.7 84 41.7
MD12G1258200 Malus domestica HOM05D003116 ORTHO05D003619 4.8e-09 64.7 85 42.4
RcHm_v2.0_Chr3g0448271 Rosa chinensis HOM05D003116 ORTHO05D003619 4.8e-09 64.7 83 42.2
Aa31LG7G11540 Aethionema arabicum HOM05D003116 ORTHO05D003619 6.3e-09 64.3 84 40.5
Gohir.A08G224000 Gossypium hirsutum HOM05D003116 ORTHO05D003619 6.3e-09 64.3 84 38.1
SMO356G0619 Selaginella moellendorffii HOM05D003116 ORTHO05D003619 6.3e-09 64.3 70 44.3
unitig_748.g8763 Utricularia gibba HOM05D003116 ORTHO05D003619 6.3e-09 64.3 70 40.0
BcaC09g50563 Brassica carinata HOM05D003116 ORTHO05D003619 8.2e-09 63.9 82 41.5
Glyma.20G219800 Glycine max HOM05D003116 ORTHO05D003619 8.2e-09 63.9 87 41.4
SEGI_30925 Sequoiadendron giganteum HOM05D003116 ORTHO05D003619 8.2e-09 63.9 71 40.8
VMungo0720G2849 Vigna mungo HOM05D003116 ORTHO05D003619 8.2e-09 63.9 87 41.4
arahy.Tifrunner.gnm1.ann1.I49W7B Arachis hypogaea HOM05D003116 ORTHO05D003619 1.8e-08 62.8 101 36.6
Cfa006285 Carpinus fangiana HOM05D003116 ORTHO05D003619 1.8e-08 62.8 83 39.8
MELO3C008594.2 Cucumis melo HOM05D003116 ORTHO05D003619 1.8e-08 62.8 96 38.5
Glyma.10G170200 Glycine max HOM05D003116 ORTHO05D003619 1.8e-08 62.8 87 40.2
arahy.Tifrunner.gnm1.ann1.6AR5V7 Arachis hypogaea HOM05D003116 ORTHO05D003619 2.4e-08 62.4 85 40.0
arahy.Tifrunner.gnm1.ann1.9IK2W2 Arachis hypogaea HOM05D003116 ORTHO05D003619 2.4e-08 62.4 85 40.0
Lj7C705G3 Lonicera japonica HOM05D003116 ORTHO05D003619 2.4e-08 62.4 77 42.9
Sed0012106 Sechium edule HOM05D003116 ORTHO05D003619 2.4e-08 62.4 96 38.5
arahy.Tifrunner.gnm1.ann1.3K1ZLN Arachis hypogaea HOM05D003116 ORTHO05D003619 3.1e-08 62.0 73 45.2
CANSAT54G1522 Cannabis sativa HOM05D003116 ORTHO05D003619 3.1e-08 62.0 85 42.4
Carub.0007s1320 Capsella rubella HOM05D003116 ORTHO05D003619 3.1e-08 62.0 84 40.5
Phvul.010G077790 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 3.1e-08 62.0 96 39.6
BraA01t01835Z Brassica rapa HOM05D003116 ORTHO05D003619 4.1e-08 61.6 87 39.1
MD04G1241200 Malus domestica HOM05D003116 ORTHO05D003619 4.1e-08 61.6 83 41.0
Potri.004G092600 Populus trichocarpa HOM05D003116 ORTHO05D003619 4.1e-08 61.6 81 39.5
Rhsim09G0131200 Rhododendron simsii HOM05D003116 ORTHO05D003619 4.1e-08 61.6 79 38.0
Haze_04522 Corylus avellana HOM05D003116 ORTHO05D003619 5.3e-08 61.2 83 38.6
Aa31LG7G11530 Aethionema arabicum HOM05D003116 ORTHO05D003619 9.1e-08 60.5 90 40.0
CiPaw.02G065200 Carya illinoinensis HOM05D003116 ORTHO05D003619 1.2e-07 60.1 83 39.8
Potri.005G204500 Populus trichocarpa HOM05D003116 ORTHO05D003619 1.2e-07 60.1 84 38.1
Duzib128G1204 Durio zibethinus HOM05D003116 ORTHO05D003619 1.5e-07 59.7 87 36.8
arahy.Tifrunner.gnm1.ann1.2YN0NK Arachis hypogaea HOM05D003116 ORTHO05D003619 2.0e-07 59.3 60 48.3
CARHR168750 Cardamine hirsuta HOM05D003116 ORTHO05D003619 2.0e-07 59.3 87 36.8
FAN09G4293 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.0e-07 59.3 90 38.9
CBR_g24366 Chara braunii HOM05D003116 ORTHO05D003619 2.6e-07 58.9 70 37.1
FAN02G4520 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.6e-07 58.9 90 37.8
FAN05G0861 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.6e-07 58.9 90 37.8
FAN14G1801 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.6e-07 58.9 90 37.8
BraA03t14807Z Brassica rapa HOM05D003116 ORTHO05D003619 5.9e-07 57.8 86 37.2
COL.COLO4_06645 Corchorus olitorius HOM05D003116 ORTHO05D003619 5.9e-07 57.8 84 39.3
DCAR_014783 Daucus carota HOM05D003116 ORTHO05D003619 5.9e-07 57.8 60 45.0
FvH4_6g00790 Fragaria vesca HOM05D003116 ORTHO05D003619 5.9e-07 57.8 90 36.7
C01p23890 Brassica napus HOM05D003116 ORTHO05D003619 7.7e-07 57.4 83 37.3
PSO210G3889 Papaver somniferum HOM05D003116 ORTHO05D003619 7.7e-07 57.4 70 38.6
AagrBONN_evm.TU.Sc2ySwM_228.5685 Anthoceros agrestis HOM05D003116 ORTHO05D003619 1.7e-06 56.2 112 35.7
Cfa023687 Carpinus fangiana HOM05D003116 ORTHO05D003619 2.9e-06 55.5 84 36.9
COL.COLO4_11895 Corchorus olitorius HOM05D003116 ORTHO05D003619 2.9e-06 55.5 94 31.9
BolC7t46042H Brassica oleracea HOM05D003116 ORTHO05D003619 5.0e-06 54.7 100 33.0
Sed0017776 Sechium edule HOM05D003116 ORTHO05D003619 5.0e-06 54.7 95 36.8
Haze_27288 Corylus avellana HOM05D003116 ORTHO05D003619 6.5e-06 54.3 88 36.4


User provided reference genes

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