Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 0.0e+00 1082.0 546 100.0
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 5.5e-205 718.0 574 66.2
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 3.3e-194 682.2 505 69.1
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.1e-189 667.2 523 65.4
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 5.2e-187 658.3 509 65.8
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.1e-184 650.6 495 67.7
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.1e-184 650.6 498 66.7
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 4.1e-184 648.7 501 66.3
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 7.0e-184 647.9 501 65.1
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 9.1e-184 647.5 504 65.9
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 2.7e-183 646.0 497 65.4
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.7e-182 643.3 501 64.5
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 5.0e-182 641.7 500 64.4
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.9e-181 639.8 504 64.1
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 2.5e-181 639.4 501 65.7
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 2.5e-181 639.4 497 65.0
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 9.4e-181 637.5 496 67.3
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.2e-180 637.1 497 64.4
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 1.2e-180 637.1 503 65.8
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.6e-180 636.7 494 65.4
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 6.1e-180 634.8 503 63.8
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.0e-179 634.0 573 58.5
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 1.4e-179 633.6 510 64.5
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.4e-179 633.6 513 63.0
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 6.8e-179 631.3 495 65.9
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 8.8e-179 630.9 498 64.9
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 5.7e-178 628.2 506 65.8
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 1.3e-177 627.1 514 62.5
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 4.8e-177 625.2 499 63.9
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 7.0e-176 621.3 510 63.1
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.1e-176 620.9 500 65.0
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.2e-175 620.5 514 63.4
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 2.7e-175 619.4 501 62.5
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.2e-174 616.3 523 62.3
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.5e-173 613.6 498 63.1
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 1.5e-173 613.6 509 62.3
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.5e-173 612.8 508 61.4
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 3.2e-173 612.5 492 63.8
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 9.5e-173 610.9 501 62.5
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.6e-172 610.1 502 64.3
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 1.6e-172 610.1 498 62.0
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.1e-172 609.8 506 62.5
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 3.6e-172 609.0 503 62.2
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.0e-171 607.4 500 61.4
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.0e-171 605.5 506 65.8
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 5.2e-171 605.1 509 61.9
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 7.5e-170 601.3 499 61.9
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 9.8e-170 600.9 504 62.5
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 4.9e-169 598.6 501 60.9
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.1e-168 597.4 511 63.6
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.1e-168 597.4 498 61.8
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 2.7e-167 592.8 503 59.6
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 2.7e-167 592.8 510 61.0
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 3.5e-167 592.4 505 60.2
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 4.5e-167 592.0 502 60.0
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 8.6e-166 587.8 502 61.2
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.1e-165 587.4 513 60.2
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.1e-165 587.4 479 63.7
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 3.3e-165 585.9 501 60.3
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 4.3e-165 585.5 504 60.3
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 7.3e-165 584.7 513 60.0
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 6.8e-163 578.2 565 59.1
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 4.6e-159 565.5 492 59.3
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 6.6e-158 561.6 518 58.1
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 3.3e-157 559.3 503 58.1
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 9.5e-157 557.8 507 58.6
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 1.0e-155 554.3 462 60.8
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 8.9e-155 551.2 506 57.1
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.4e-154 549.3 533 56.3
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 2.0e-151 540.0 625 49.4
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.7e-151 539.7 605 49.6
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 2.7e-151 539.7 468 61.1
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.7e-151 539.7 376 70.7
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 3.5e-151 539.3 486 59.7
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 7.8e-151 538.1 506 56.5
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 5.6e-149 531.9 503 55.3
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 3.6e-148 529.3 375 70.1
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 3.6e-148 529.3 505 57.6
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.1e-147 527.7 364 72.5
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.8e-147 525.0 427 63.9
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.8e-147 525.0 508 56.9
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 7.5e-146 521.5 541 53.6
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.2e-144 516.2 367 68.7
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 6.0e-143 511.9 435 61.1
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.3e-142 510.8 538 52.6
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.2e-138 497.7 497 53.9
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 1.9e-136 490.3 430 57.7
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 6.6e-134 481.9 422 60.2
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 8.6e-134 481.5 412 62.6
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 2.4e-131 473.4 507 50.9
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 8.4e-129 464.9 377 62.9
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 1.2e-127 461.1 453 54.3
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 7.8e-127 458.4 451 54.1
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.0e-126 456.4 321 71.0
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 1.6e-124 450.7 439 55.1
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 3.1e-123 446.4 503 49.1
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.6e-122 443.4 424 56.4
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 5.4e-120 435.6 414 57.7
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.9e-117 427.2 432 54.4
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.3e-117 426.4 405 58.5
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 1.6e-116 424.1 303 69.0
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.9e-112 410.6 339 62.5
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 5.8e-106 389.0 338 61.2
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 1.3e-105 387.9 455 47.5
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 3.1e-99 366.7 520 40.4
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 3.8e-97 359.8 465 44.1
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.7e-92 344.4 380 52.6
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 2.8e-92 343.6 492 41.7
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 5.0e-89 332.8 252 65.5
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.4e-85 318.9 283 60.8
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.1e-83 313.2 325 57.2
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 1.0e-78 298.5 230 63.0
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.0e-78 297.0 434 42.2
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 5.9e-66 256.1 380 45.0
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.1e-64 251.9 460 38.5
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.8e-51 208.0 417 36.2
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 9.2e-51 205.7 198 55.1
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 4.5e-50 203.4 193 58.0
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 6.6e-49 199.5 598 30.8
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 4.3e-48 196.8 189 52.9
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.9e-43 181.4 203 53.2
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 2.4e-43 181.0 158 62.7
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 2.3e-38 164.5 192 50.5
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 6.8e-38 162.9 349 35.2
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 2.0e-37 161.4 156 57.7
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.1e-34 151.4 174 49.4
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 7.8e-34 149.4 196 44.9
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.8e-30 138.3 86 74.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.8e-30 138.3 122 51.6
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.1e-30 137.5 109 69.7
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 3.5e-26 124.0 78 69.2
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 5.2e-22 110.2 71 74.6
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 6.8e-22 109.8 78 65.4
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.0e-21 108.2 81 61.7
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 3.4e-21 107.5 155 41.9
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 5.8e-21 106.7 78 62.8
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 2.2e-20 104.8 437 27.0
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 3.0e-17 94.4 90 55.6
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.5e-16 92.0 66 71.2
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.5e-16 91.3 55 69.1
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 2.5e-16 91.3 55 80.0
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 2.5e-16 91.3 81 51.9
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.1e-15 88.2 43 93.0
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.8e-13 80.1 45 84.4
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.1e-08 65.9 81 44.4
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.1e-08 65.9 81 44.4
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 4.8e-07 60.5 41 65.9


User provided reference genes

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