Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 2.9e-37 158.3 95 100.0
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 6.1e-19 97.4 95 71.6
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.8e-15 85.9 82 70.7
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 2.4e-15 85.5 82 73.2
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 9.1e-15 83.6 88 65.9
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.6e-14 82.8 93 67.7
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.7e-14 82.0 82 65.9
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 5.9e-14 80.9 79 70.9
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 5.9e-14 80.9 79 70.9
AUR62001519 Chenopodium quinoa HOM05D003238 ORTHO05D003571 7.7e-14 80.5 98 65.3
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 7.7e-14 80.5 84 69.0
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 1.3e-13 79.7 80 73.8
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.7e-13 79.3 89 67.4
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 1.7e-13 79.3 82 69.5
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.3e-13 79.0 78 73.1
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 2.3e-13 79.0 91 67.0
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 2.9e-13 78.6 81 66.7
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.8e-13 78.2 92 63.0
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 3.8e-13 78.2 79 67.1
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 5.0e-13 77.8 82 69.5
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 6.5e-13 77.4 80 72.5
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 6.5e-13 77.4 80 71.2
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.1e-12 76.6 84 64.3
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.1e-12 76.6 84 64.3
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 3.2e-12 75.1 76 69.7
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.2e-12 74.7 92 64.1
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 4.2e-12 74.7 76 67.1
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 5.5e-12 74.3 79 67.1
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 5.5e-12 74.3 88 63.6
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 5.5e-12 74.3 91 61.5
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 5.5e-12 74.3 79 65.8
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 7.2e-12 73.9 78 67.9
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 7.2e-12 73.9 78 67.9
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 9.5e-12 73.6 79 69.6
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 9.5e-12 73.6 78 69.2
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 9.5e-12 73.6 79 73.4
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 1.2e-11 73.2 73 72.6
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.2e-11 73.2 87 58.6
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.2e-11 73.2 72 72.2
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.2e-11 73.2 92 60.9
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.2e-11 73.2 80 68.8
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 2.1e-11 72.4 62 66.1
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 2.1e-11 72.4 81 67.9
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 2.1e-11 72.4 80 63.8
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.8e-11 72.0 78 67.9
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 2.8e-11 72.0 79 65.8
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.8e-11 72.0 72 69.4
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 2.8e-11 72.0 80 65.0
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.6e-11 71.6 73 71.2
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.6e-11 71.6 79 64.6
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 3.6e-11 71.6 76 51.3
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 4.7e-11 71.2 84 65.5
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 6.1e-11 70.9 77 66.2
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 8.0e-11 70.5 85 64.7
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 8.0e-11 70.5 91 44.0
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.0e-10 70.1 95 62.1
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.0e-10 70.1 79 64.6
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.4e-10 69.7 72 68.1
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 2.3e-10 68.9 78 47.4
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.3e-10 68.9 89 58.4
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 6.8e-10 67.4 79 68.4
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 6.8e-10 67.4 77 66.2
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 8.8e-10 67.0 79 43.0
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 8.8e-10 67.0 94 42.6
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 8.8e-10 67.0 82 64.6
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.2e-09 66.6 89 59.6
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 1.5e-09 66.2 88 62.5
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.5e-09 66.2 79 63.3
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 2.0e-09 65.9 78 61.5
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 2.0e-09 65.9 78 46.2
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.0e-09 65.9 76 64.5
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 2.6e-09 65.5 75 66.7
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.6e-09 65.5 79 64.6
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 3.4e-09 65.1 89 59.6
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.4e-09 65.1 89 59.6
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 4.4e-09 64.7 76 61.8
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 4.4e-09 64.7 84 61.9
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 4.4e-09 64.7 84 61.9
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 5.7e-09 64.3 89 59.6
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 5.7e-09 64.3 72 41.7
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 7.5e-09 63.9 80 58.8
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.5e-09 63.9 89 58.4
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 7.5e-09 63.9 89 56.2
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 9.8e-09 63.5 76 44.7
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 9.8e-09 63.5 93 57.0
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.3e-08 63.2 90 57.8
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 1.7e-08 62.8 78 62.8
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.7e-08 62.8 80 65.0
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.7e-08 62.8 49 61.2
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.2e-08 62.4 90 42.2
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 2.2e-08 62.4 80 65.0
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.8e-08 62.0 89 59.6
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 3.7e-08 61.6 79 59.5
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 3.7e-08 61.6 79 59.5
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 4.9e-08 61.2 52 61.5
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 4.9e-08 61.2 86 54.7
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.9e-08 61.2 89 55.1
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 6.3e-08 60.8 86 59.3
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 6.3e-08 60.8 78 60.3
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 8.3e-08 60.5 78 60.3
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 8.3e-08 60.5 80 43.8
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.1e-07 60.1 82 57.3
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 1.1e-07 60.1 74 64.9
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.1e-07 60.1 93 38.7
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-07 59.7 87 48.3
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-07 59.7 87 56.3
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.4e-07 59.7 87 48.3
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.4e-07 59.7 89 57.3
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.4e-07 59.7 91 40.7
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.4e-07 59.7 88 58.0
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 2.4e-07 58.9 74 45.9
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 3.1e-07 58.5 91 38.5
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 3.1e-07 58.5 78 57.7
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 3.1e-07 58.5 57 49.1
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 4.1e-07 58.2 79 63.3
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 4.1e-07 58.2 88 56.8
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 4.1e-07 58.2 75 40.0
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 5.4e-07 57.8 93 53.8
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 5.4e-07 57.8 48 56.2
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 5.4e-07 57.8 72 65.3
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 7.0e-07 57.4 79 57.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 9.2e-07 57.0 79 39.2
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 9.2e-07 57.0 77 40.3
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 9.2e-07 57.0 78 59.0
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 9.2e-07 57.0 73 57.5
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.2e-06 56.6 78 61.5
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 2.0e-06 55.8 79 43.0
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.0e-06 55.8 88 34.1
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 2.0e-06 55.8 116 35.3
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.0e-06 55.8 80 58.8
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 2.0e-06 55.8 104 37.5
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 2.7e-06 55.5 136 33.1
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 2.7e-06 55.5 127 41.7
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.7e-06 55.5 65 44.6
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.5e-06 55.1 90 54.4
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.5e-06 55.1 58 50.0
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 4.5e-06 54.7 76 42.1
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 4.5e-06 54.7 65 46.2
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 5.9e-06 54.3 88 40.9
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 7.8e-06 53.9 50 60.0
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 7.8e-06 53.9 58 50.0
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.8e-06 53.9 58 50.0
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.8e-06 53.9 58 50.0
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 7.8e-06 53.9 72 59.7
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.8e-06 53.9 41 58.5


User provided reference genes

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