Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 5.1e-221 770.8 390 100.0
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 2.7e-129 466.1 401 60.8
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 7.1e-122 441.4 412 55.6
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.1e-117 427.6 412 54.6
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 6.9e-117 424.9 414 54.8
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.4e-116 422.5 438 51.4
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.5e-111 407.1 407 53.3
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.6e-110 403.7 414 51.4
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.8e-110 402.9 402 53.7
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 2.8e-110 402.9 393 54.5
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 4.8e-110 402.1 408 52.7
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 4.8e-110 402.1 394 55.1
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 6.9e-109 398.3 401 54.4
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 9.0e-109 397.9 421 51.1
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 3.8e-107 392.5 399 52.9
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.1e-106 391.0 421 49.9
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 4.2e-106 389.0 388 53.1
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 5.5e-106 388.7 401 50.9
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 7.1e-106 388.3 405 51.4
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 9.3e-106 387.9 399 52.4
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 1.3e-104 384.0 421 50.1
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.9e-104 382.5 391 51.9
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 3.9e-104 382.5 421 49.6
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.1e-103 380.9 414 50.5
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 1.9e-103 380.2 361 56.0
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 2.5e-103 379.8 396 53.5
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 2.5e-103 379.8 395 50.6
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 2.8e-102 376.3 387 50.9
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.1e-101 374.4 412 50.5
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.8e-101 373.6 408 49.0
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 3.1e-101 372.9 422 48.3
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 9.0e-101 371.3 398 48.5
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 1.2e-100 370.9 412 50.2
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.5e-100 370.5 397 50.4
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 4.5e-100 369.0 391 50.9
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.8e-100 368.6 388 51.3
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 5.8e-100 368.6 409 50.9
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.3e-99 367.5 397 50.1
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 8.4e-99 364.8 420 47.9
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 1.9e-98 363.6 392 48.2
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.9e-98 363.6 408 49.0
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 2.5e-98 363.2 387 50.9
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 3.2e-98 362.8 438 45.9
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 7.1e-98 361.7 438 46.1
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 9.3e-98 361.3 396 50.3
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 9.3e-98 361.3 419 44.6
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.2e-97 360.9 438 45.9
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 3.5e-97 359.4 398 49.2
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 2.3e-96 356.7 383 49.9
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 1.9e-95 353.6 435 46.2
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 7.4e-95 351.7 398 49.5
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 1.4e-93 347.4 391 48.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 2.4e-93 346.7 417 47.2
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 3.1e-93 346.3 384 49.5
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 5.3e-93 345.5 418 46.9
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 6.9e-93 345.1 409 48.7
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.0e-92 343.6 481 43.7
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 5.9e-92 342.0 397 46.3
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.3e-91 340.9 411 47.4
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.3e-91 340.9 399 47.9
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-91 340.5 399 47.9
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.2e-91 340.1 425 44.2
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 6.5e-91 338.6 399 47.9
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 6.5e-91 338.6 383 47.8
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-90 337.8 399 47.1
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.1e-90 337.8 465 43.2
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-90 337.4 399 47.6
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.2e-90 336.3 412 46.6
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 4.2e-90 335.9 438 44.5
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 2.7e-89 333.2 400 47.0
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.3e-88 330.1 404 47.3
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 6.7e-88 328.6 421 44.7
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 2.5e-87 326.6 432 43.3
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 4.3e-87 325.9 395 45.3
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.7e-87 325.5 435 44.4
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.3e-86 324.3 317 54.6
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.3e-86 324.3 396 46.0
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.2e-86 323.6 389 44.7
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 3.7e-86 322.8 396 44.7
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 4.8e-86 322.4 395 44.6
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.4e-85 320.9 397 45.3
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 1.8e-85 320.5 391 44.0
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 3.1e-85 319.7 422 45.0
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 4.1e-85 319.3 391 44.5
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 4.1e-85 319.3 426 42.3
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 5.3e-85 318.9 419 43.0
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 1.2e-84 317.8 389 46.0
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 3.8e-83 312.8 418 44.7
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 8.5e-83 311.6 429 41.3
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 3.2e-82 309.7 416 43.3
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 4.2e-82 309.3 428 41.8
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 5.5e-82 308.9 392 42.6
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 5.5e-82 308.9 392 42.6
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 5.5e-82 308.9 392 42.6
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.2e-81 307.8 387 43.4
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 1.2e-81 307.8 395 44.6
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 2.1e-81 307.0 392 42.9
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 2.1e-81 307.0 393 46.1
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 3.6e-81 306.2 351 48.7
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 6.1e-81 305.4 430 41.2
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 6.7e-80 302.0 400 43.8
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 2.0e-79 300.4 417 43.6
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 4.3e-79 299.3 408 42.9
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 8.2e-78 295.0 370 44.9
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 1.4e-77 294.3 402 43.3
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 5.3e-77 292.4 424 39.9
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.7e-75 287.3 403 43.2
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.6e-73 280.8 647 32.3
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 2.7e-73 280.0 412 41.3
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 6.7e-72 275.4 399 42.9
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-70 271.2 357 44.3
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.1e-66 258.1 376 41.2
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 4.2e-66 256.1 444 37.4
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.6e-65 254.2 316 45.3
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 4.5e-60 236.1 307 43.0
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 2.7e-57 226.9 413 38.3
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 8.0e-57 225.3 422 35.8
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 7.7e-52 208.8 243 45.7
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 2.2e-51 207.2 458 34.3
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 3.2e-50 203.4 442 33.7
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.0e-48 198.4 338 38.5
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 8.8e-48 195.3 217 45.2
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 7.5e-47 192.2 277 40.4
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 7.5e-47 192.2 298 38.6
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.1e-45 186.8 207 47.8
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.7e-44 183.7 235 41.3
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.3e-42 176.8 237 45.1
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.0e-39 167.5 231 39.4
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 5.0e-35 152.9 176 49.4
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.9e-32 142.1 350 32.6
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.0e-31 141.0 283 34.6
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 3.2e-29 133.7 282 32.6
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.2e-28 131.7 236 37.3
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.7e-28 130.6 373 29.5
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 7.8e-28 129.0 295 34.6
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.9e-27 126.7 140 49.3
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.9e-26 124.4 158 45.6
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.1e-25 120.9 378 28.8
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 3.6e-25 120.2 104 51.0
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 8.1e-25 119.0 126 49.2
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 5.2e-24 116.3 448 26.3
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.8e-23 112.1 374 28.1
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.8e-23 112.1 244 31.6
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 1.1e-21 108.6 146 45.2
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 1.5e-18 98.2 105 46.7
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.1e-17 94.4 92 51.1
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 3.6e-17 93.6 100 50.0
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.3e-16 90.9 156 37.2
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.2e-13 80.5 145 36.6
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 3.0e-11 73.9 132 34.1
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 3.0e-11 73.9 102 38.2
ATR0589G117 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.5e-07 61.6 87 37.9
Cre01.g070567 Chlamydomonas reinhardtii HOM05D004436 ORTHO05D005179 2.9e-06 57.4 429 21.0
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 6.4e-06 56.2 95 33.7
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 8.4e-06 55.8 147 30.6


User provided reference genes

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