Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 0.0e+00 1491.1 724 100.0
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1130.9 704 79.0
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1078.5 771 71.5
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 9.2e-309 1063.1 754 71.4
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 4.6e-292 1007.7 728 69.5
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 2.8e-289 998.4 779 65.3
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 6.4e-286 987.3 782 65.5
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.1e-285 986.5 783 64.2
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 2.3e-283 978.8 728 67.4
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 3.7e-281 971.5 804 63.2
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 1.4e-280 969.5 789 63.0
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 6.9e-280 967.2 780 64.6
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 2.0e-279 965.7 792 63.3
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 3.8e-278 961.4 770 64.5
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 8.4e-278 960.3 780 64.1
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 1.4e-277 959.5 759 64.7
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 1.4e-277 959.5 791 63.6
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 7.1e-277 957.2 774 64.0
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.6e-276 956.1 774 63.8
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 1.6e-276 956.1 780 63.8
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 6.0e-276 954.1 783 63.1
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 1.8e-275 952.6 779 64.3
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 1.5e-274 949.5 774 63.6
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 7.4e-274 947.2 797 62.7
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 2.8e-273 945.3 768 63.8
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 1.4e-272 943.0 764 64.4
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 4.5e-271 937.9 783 63.5
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 1.0e-270 936.8 779 63.2
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.7e-270 936.0 743 66.2
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 1.7e-270 936.0 782 62.5
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 2.5e-266 922.2 790 61.4
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 4.3e-266 921.4 791 61.7
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 1.3e-265 919.8 777 62.2
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 8.2e-265 917.1 787 61.2
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 1.1e-264 916.8 786 61.1
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 4.5e-263 911.4 761 63.1
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 5.9e-263 911.0 809 60.2
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 7.7e-263 910.6 725 64.8
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 1.0e-262 910.2 725 65.1
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 8.5e-262 907.1 784 61.4
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 1.1e-261 906.7 725 64.6
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 1.4e-261 906.4 780 61.7
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 1.4e-261 906.4 776 61.6
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 2.5e-261 905.6 761 62.3
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 6.1e-260 901.0 702 66.2
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 3.9e-259 898.3 747 61.6
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 2.5e-258 895.6 778 60.7
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 3.3e-258 895.2 789 61.1
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 4.8e-257 891.3 804 60.1
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 3.1e-256 888.6 749 61.8
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 4.1e-256 888.3 774 59.8
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 5.9e-255 884.4 774 60.7
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.3e-254 883.2 771 60.2
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 1.7e-254 882.9 763 60.6
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 3.8e-254 881.7 763 61.1
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 8.5e-254 880.6 760 60.4
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 8.5e-254 880.6 774 59.8
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 9.4e-253 877.1 841 56.0
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 3.6e-252 875.2 859 55.9
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 7.9e-252 874.0 765 60.8
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 5.1e-251 871.3 750 62.0
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 3.3e-250 868.6 719 62.3
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 3.8e-246 855.1 773 59.6
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 2.5e-245 852.4 789 58.0
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 2.1e-244 849.4 758 60.2
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 5.7e-242 841.3 732 59.0
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 5.7e-242 841.3 842 54.9
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 1.1e-240 837.0 703 62.7
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 4.1e-240 835.1 797 57.7
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 4.1e-240 835.1 760 58.6
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 9.1e-240 833.9 790 57.7
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 1.7e-238 829.7 770 57.4
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 2.2e-238 829.3 752 58.2
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 4.7e-236 821.6 746 58.0
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 4.7e-236 821.6 760 57.5
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 6.8e-227 791.2 741 58.0
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 8.8e-227 790.8 730 58.4
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 7.5e-226 787.7 735 57.4
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 6.3e-225 784.6 733 57.7
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 1.3e-222 776.9 753 57.0
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 2.5e-221 772.7 730 57.0
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 2.1e-220 769.6 725 56.7
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 2.1e-220 769.6 700 57.0
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 4.7e-220 768.5 728 57.7
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 1.0e-219 767.3 787 54.0
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.4e-219 766.9 745 55.8
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.5e-218 763.5 716 57.5
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.5e-218 763.5 716 57.5
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 4.4e-218 761.9 723 58.0
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 7.5e-218 761.1 714 56.9
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 2.2e-217 759.6 722 57.5
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 1.6e-212 743.4 707 56.9
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.3e-209 733.8 710 57.7
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 5.1e-198 695.3 745 52.9
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 1.8e-195 686.8 645 57.5
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 2.4e-179 633.3 471 68.4
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.5e-173 613.2 501 63.9
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 5.3e-163 578.9 651 52.4
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.5e-146 524.2 825 40.4
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.6e-146 523.5 822 41.7
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.9e-142 509.6 793 40.5
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 1.5e-133 481.1 727 43.3
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 7.7e-122 442.2 308 70.1
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 1.0e-121 441.8 455 54.9
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.5e-120 436.0 421 56.1
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.3e-118 430.6 365 63.6
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 1.5e-112 411.4 367 56.9
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 4.4e-109 399.8 278 70.1
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 7.0e-107 392.5 273 70.3
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.5e-104 384.8 306 63.7
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 2.1e-87 327.8 253 64.8
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 7.6e-77 292.7 284 53.5
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.5e-72 278.5 544 36.0
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.5e-72 278.5 544 36.0
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.1e-62 245.7 202 65.8
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 1.3e-57 228.8 683 29.1
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.4e-53 214.2 417 32.9
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.9e-51 208.4 117 78.6
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 5.5e-51 206.8 184 62.5
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 3.9e-49 200.7 413 31.0
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 9.3e-35 152.9 282 36.9
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.1e-30 137.5 84 72.6
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 7.7e-29 133.3 270 31.9
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.1e-24 119.4 60 86.7
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 3.1e-22 111.3 88 68.2
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-20 106.3 58 86.2
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-19 102.8 55 87.3
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-19 102.8 55 87.3
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-19 102.8 55 87.3
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-19 102.8 55 87.3
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-19 102.8 55 87.3
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-19 102.8 55 87.3
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-19 102.8 55 87.3
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-19 102.8 55 87.3
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-19 102.8 55 87.3
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-19 102.8 55 87.3
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.4e-19 102.4 55 87.3
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 7.4e-16 90.1 227 27.8
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 9.7e-16 89.7 46 84.8
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 5.3e-14 84.0 46 76.1
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 3.5e-13 81.3 69 58.0
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 1.3e-12 79.3 57 66.7
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.9e-12 78.2 46 71.7
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.0e-09 69.7 33 87.9
AUR62008643 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-09 68.6 37 83.8
AUR62027688 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 68.2 41 78.0
AUR62008556 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.0e-08 65.5 36 83.3
AUR62013764 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.0e-08 65.5 36 83.3
AUR62038642 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.0e-08 65.5 46 71.7
AUR62020656 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.6e-08 65.1 35 85.7
AUR62044062 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-07 62.8 34 85.3
AUR62044283 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-07 62.8 34 85.3
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 2.8e-07 61.6 40 65.0
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 6.3e-07 60.5 52 50.0
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 1.8e-06 58.9 47 57.4


User provided reference genes

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