Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 0.0e+00 1372.1 691 100.0
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 6.2e-238 827.8 683 65.6
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 5.7e-215 751.5 687 61.6
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 3.7e-214 748.8 722 59.7
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 9.4e-194 681.0 668 56.9
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 5.3e-189 665.2 672 58.5
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 1.0e-187 661.0 665 58.3
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 9.4e-186 654.4 687 54.9
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 6.1e-185 651.7 677 56.1
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 1.3e-182 644.0 691 54.3
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 3.7e-182 642.5 686 55.2
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 2.4e-181 639.8 702 53.7
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 2.8e-177 626.3 676 55.6
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.5e-175 620.5 674 54.2
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 2.6e-175 619.8 678 54.7
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.3e-174 617.5 692 53.8
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.9e-174 615.5 681 55.7
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 5.9e-172 608.6 694 52.4
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 2.3e-171 606.7 683 51.7
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 2.9e-171 606.3 691 52.8
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 6.6e-171 605.1 674 54.6
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 2.5e-170 603.2 686 52.6
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 7.3e-170 601.7 679 54.5
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 3.6e-169 599.4 686 53.2
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 4.7e-169 599.0 672 53.6
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 1.8e-168 597.0 687 51.7
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 4.0e-168 595.9 679 54.2
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 6.8e-168 595.1 634 53.9
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 2.6e-167 593.2 662 55.0
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 7.5e-167 591.7 679 52.1
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 2.9e-166 589.7 672 51.8
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 4.9e-166 589.0 849 44.9
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 6.4e-166 588.6 682 52.5
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 1.1e-165 587.8 688 52.8
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 1.6e-164 583.9 664 52.0
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 2.0e-164 583.6 688 51.2
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 4.6e-164 582.4 684 52.0
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.0e-163 581.3 691 51.8
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.3e-163 580.9 662 52.1
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 1.7e-163 580.5 676 52.1
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 2.3e-163 580.1 674 52.4
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 1.5e-162 577.4 673 51.3
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 1.9e-162 577.0 690 50.3
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.5e-162 576.6 689 51.5
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 1.1e-160 571.2 690 49.9
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.3e-160 570.1 674 51.3
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 3.1e-160 569.7 686 49.4
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 5.2e-160 568.9 682 50.9
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 6.8e-160 568.5 687 50.1
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 8.9e-160 568.2 740 49.2
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 1.5e-159 567.4 678 51.0
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 1.5e-159 567.4 682 50.7
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 2.6e-159 566.6 674 50.0
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 4.4e-159 565.8 663 52.3
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 1.9e-157 560.5 684 49.6
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 9.2e-157 558.1 676 50.9
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 9.2e-157 558.1 643 51.8
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 4.6e-156 555.8 682 49.6
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 2.3e-155 553.5 633 52.3
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 3.0e-155 553.1 674 51.3
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 6.6e-155 552.0 718 48.3
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 1.5e-154 550.8 689 50.4
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 2.5e-154 550.1 718 48.2
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 2.1e-153 547.0 696 48.7
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.1e-152 544.7 680 50.1
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.1e-152 544.7 684 49.6
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 2.6e-151 540.0 658 50.2
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.6e-151 540.0 686 49.4
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 4.4e-151 539.3 677 50.8
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 1.7e-150 537.3 680 49.9
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 3.7e-150 536.2 684 49.4
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 8.3e-150 535.0 663 49.3
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.9e-149 533.9 700 48.7
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 4.1e-149 532.7 668 49.7
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 7.1e-149 531.9 678 49.7
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.5e-148 529.6 694 49.1
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 3.5e-148 529.6 717 46.9
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 2.3e-147 526.9 667 49.5
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 1.1e-146 524.6 745 47.9
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 1.6e-145 520.8 677 48.4
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 2.8e-145 520.0 663 48.7
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 3.6e-145 519.6 664 48.8
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 1.1e-144 518.1 698 47.4
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 1.4e-144 517.7 663 48.6
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 3.1e-144 516.5 648 50.6
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 5.2e-144 515.8 661 47.8
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 5.2e-144 515.8 666 48.6
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 6.8e-144 515.4 671 49.3
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 1.2e-143 514.6 660 48.8
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 1.5e-143 514.2 673 48.6
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 2.6e-143 513.5 670 49.1
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 7.6e-143 511.9 670 48.8
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.3e-142 511.1 670 49.6
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 8.4e-142 508.4 663 49.3
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 8.4e-142 508.4 593 53.0
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 2.4e-141 506.9 674 47.8
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 5.4e-141 505.8 664 48.6
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 7.1e-141 505.4 671 48.7
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 1.6e-140 504.2 670 48.1
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 6.0e-140 502.3 638 48.3
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 1.5e-138 497.7 649 49.2
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 1.9e-138 497.3 621 47.8
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 1.6e-137 494.2 594 47.8
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 3.6e-137 493.0 702 45.0
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.4e-136 491.1 675 46.8
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 6.6e-131 472.2 579 49.6
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 5.8e-127 459.1 597 46.1
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 1.6e-124 451.1 668 45.2
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 8.7e-123 445.3 759 42.7
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 3.7e-121 439.9 646 43.5
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.2e-119 434.9 605 45.5
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 6.0e-116 422.5 670 42.4
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 2.3e-115 420.6 648 42.0
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 2.9e-110 403.7 615 42.9
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 4.5e-103 379.8 649 41.8
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 2.9e-94 350.5 388 53.1
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.5e-93 346.3 526 43.7
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 2.0e-90 337.8 650 38.3
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 3.1e-88 330.5 629 38.5
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.5e-77 295.0 581 38.2
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 6.7e-75 286.2 661 34.6
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 6.7e-75 286.2 640 35.2
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 5.0e-70 270.0 670 32.1
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 1.1e-64 252.3 675 33.0
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 7.3e-53 213.0 185 63.2
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 4.3e-45 187.2 210 51.0
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 5.6e-45 186.8 490 31.4
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.1e-43 181.0 181 55.8
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 7.5e-42 176.4 300 40.0
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 7.0e-40 169.9 218 48.6
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 2.8e-36 157.9 686 29.0
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 6.4e-33 146.7 96 74.0
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 2.3e-30 138.3 126 59.5
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 1.3e-25 122.5 147 52.4
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 1.6e-23 115.5 631 25.8
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.9e-21 108.6 105 52.4
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 7.3e-13 80.1 99 47.5
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 6.4e-09 67.0 90 47.8
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 6.0e-07 60.5 148 33.1
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 6.0e-07 60.5 148 33.1
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 6.0e-07 60.5 62 53.2
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 6.0e-07 60.5 148 33.1


User provided reference genes

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