Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 5.6e-155 551.2 301 100.0
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 2.1e-61 240.4 313 53.7
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.2e-59 234.6 302 52.6
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 2.7e-48 196.8 324 46.0
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 3.5e-48 196.4 292 47.3
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 3.5e-48 196.4 329 46.5
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 3.0e-47 193.4 314 45.2
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 3.3e-46 189.9 324 46.3
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 9.6e-46 188.3 314 46.8
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.3e-45 188.0 299 47.5
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 3.7e-45 186.4 316 46.2
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.1e-44 184.9 320 46.2
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 2.6e-43 180.3 335 43.9
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 4.5e-43 179.5 310 45.8
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 4.5e-43 179.5 357 41.2
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 5.8e-43 179.1 324 46.0
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 1.7e-42 177.6 316 44.0
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 2.2e-42 177.2 312 46.8
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 2.9e-42 176.8 341 43.7
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 3.8e-42 176.4 314 45.2
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 4.9e-42 176.0 314 44.3
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.9e-41 174.1 330 44.5
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 3.2e-41 173.3 321 43.6
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 4.2e-41 172.9 317 44.8
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.2e-41 172.9 313 44.7
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 9.3e-41 171.8 306 46.1
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.2e-40 171.4 327 35.8
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.6e-40 171.0 347 45.0
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 1.6e-40 171.0 356 42.4
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 2.1e-40 170.6 329 44.7
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 3.0e-39 166.8 310 41.9
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-38 164.9 330 37.0
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 1.1e-38 164.9 321 42.4
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.3e-38 162.9 338 41.7
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 5.7e-38 162.5 263 44.9
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 7.4e-38 162.2 322 42.5
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 1.6e-37 161.0 301 43.2
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 1.6e-37 161.0 268 47.8
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.1e-37 160.6 324 43.5
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 3.7e-37 159.8 313 44.4
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 1.8e-36 157.5 312 43.3
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 4.1e-36 156.4 297 42.4
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 6.9e-36 155.6 246 49.6
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.2e-35 154.8 303 45.9
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.5e-35 154.5 325 44.3
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 4.5e-35 152.9 227 41.9
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 5.8e-35 152.5 312 42.9
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 5.8e-35 152.5 275 46.2
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 7.6e-35 152.1 334 41.9
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 2.2e-34 150.6 328 43.6
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.9e-34 150.2 372 34.7
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.9e-34 150.2 339 42.8
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.8e-34 149.8 342 40.9
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 5.0e-34 149.4 305 43.9
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 5.0e-34 149.4 325 43.7
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 3.2e-33 146.7 323 40.6
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 4.2e-33 146.4 335 43.0
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.2e-32 144.8 326 41.1
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 3.5e-32 143.3 337 40.7
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 3.5e-32 143.3 324 43.5
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 6.1e-32 142.5 334 41.6
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 6.1e-32 142.5 324 42.6
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 7.9e-32 142.1 300 43.0
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 1.8e-31 141.0 348 39.1
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 6.7e-31 139.0 348 38.5
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 2.5e-30 137.1 228 49.1
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 3.7e-29 133.3 323 41.8
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 4.8e-29 132.9 334 41.6
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 1.5e-27 127.9 323 36.5
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 5.9e-27 125.9 311 31.8
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 2.9e-26 123.6 313 37.1
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 5.0e-26 122.9 300 33.3
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 6.5e-26 122.5 311 31.5
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 6.5e-26 122.5 311 31.5
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 1.4e-25 121.3 204 37.7
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 3.2e-25 120.2 313 31.0
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 3.2e-25 120.2 321 31.2
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 4.2e-25 119.8 304 31.6
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 5.5e-25 119.4 326 37.4
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 7.2e-25 119.0 304 30.6
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 9.4e-25 118.6 184 41.3
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.1e-24 117.5 314 30.3
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 2.7e-24 117.1 315 35.6
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 3.6e-24 116.7 311 31.2
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 4.6e-24 116.3 309 30.7
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 7.9e-24 115.5 316 31.0
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 1.0e-23 115.2 295 37.3
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 1.8e-23 114.4 323 34.7
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 1.8e-23 114.4 214 35.0
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 2.3e-23 114.0 191 47.6
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 3.0e-23 113.6 248 39.1
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 6.7e-23 112.5 317 38.5
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 4.3e-22 109.8 203 35.0
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 7.4e-22 109.0 295 40.3
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 7.4e-22 109.0 333 36.0
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 1.7e-21 107.8 351 33.9
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 2.4e-20 104.0 308 37.7
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 6.9e-20 102.4 192 45.3
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.5e-19 101.3 173 41.6
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 2.2e-18 97.4 183 38.3
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.2e-17 93.6 128 39.8
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 4.2e-17 93.2 328 29.6
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.1e-14 85.1 168 42.3
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.0e-14 84.3 122 41.0
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 7.4e-14 82.4 169 39.1
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 9.7e-14 82.0 187 32.6
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 1.7e-13 81.3 172 30.8
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 6.3e-13 79.3 305 35.7
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 8.2e-13 79.0 129 36.4
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 1.4e-12 78.2 172 29.7
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 1.8e-12 77.8 303 35.0
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 9.1e-12 75.5 143 35.0
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 4.5e-11 73.2 313 34.8
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 1.3e-10 71.6 191 30.9
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 2.9e-10 70.5 169 32.0
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.1e-08 64.3 167 37.7
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.1e-08 62.8 45 60.0
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 8.8e-07 58.9 204 24.5
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 8.8e-07 58.9 132 31.8
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.1e-06 58.5 45 57.8
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 2.0e-06 57.8 61 45.9
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 2.6e-06 57.4 53 52.8
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 4.4e-06 56.6 46 54.3
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 5.7e-06 56.2 45 55.6
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 5.7e-06 56.2 48 56.2
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 5.7e-06 56.2 37 64.9
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 9.7e-06 55.5 47 51.1
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 9.7e-06 55.5 74 37.8


User provided reference genes

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