Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20322 Selenicereus undatus HOM05D003842 ORTHO05D004436 9.7e-192 673.3 342 100.0
EL10Ac7g16718 Beta vulgaris HOM05D003842 ORTHO05D004436 6.4e-119 431.4 304 74.0
AUR62036532 Chenopodium quinoa HOM05D003842 ORTHO05D004436 2.4e-118 429.5 304 73.0
Ah.08g211380 Amaranthus hybridus HOM05D003842 ORTHO05D004436 3.9e-116 422.2 304 71.1
CSS0021824 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 1.1e-115 420.6 267 79.0
CSS0023266 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 1.1e-115 420.6 267 79.0
Prupe.7G124700 Prunus persica HOM05D003842 ORTHO05D004436 3.3e-115 419.1 307 70.7
GSVIVG01033696001 Vitis vinifera HOM05D003842 ORTHO05D004436 5.6e-115 418.3 267 79.0
Manes.08G013802 Manihot esculenta HOM05D003842 ORTHO05D004436 7.4e-115 417.9 272 77.9
Dinv35821 Davidia involucrata HOM05D003842 ORTHO05D004436 3.7e-114 415.6 267 78.3
CANSAT80G2389 Cannabis sativa HOM05D003842 ORTHO05D004436 1.4e-113 413.7 316 68.4
QL07p041738 Quercus lobata HOM05D003842 ORTHO05D004436 1.8e-113 413.3 304 70.1
Potri.006G120800 Populus trichocarpa HOM05D003842 ORTHO05D004436 3.1e-113 412.5 266 77.8
TWI74G0820 Tripterygium wilfordii HOM05D003842 ORTHO05D004436 3.1e-113 412.5 308 70.1
Migut.L01724 Erythranthe guttata HOM05D003842 ORTHO05D004436 4.0e-113 412.1 273 75.1
Cfa016461 Carpinus fangiana HOM05D003842 ORTHO05D004436 2.0e-112 409.8 304 70.1
Thecc.05G072900 Theobroma cacao HOM05D003842 ORTHO05D004436 2.0e-112 409.8 303 70.3
Actinidia26647 Actinidia chinensis HOM05D003842 ORTHO05D004436 9.9e-112 407.5 266 76.7
Solyc09g008490.4 Solanum lycopersicum HOM05D003842 ORTHO05D004436 2.2e-111 406.4 268 76.1
Sopen09g003320 Solanum pennellii HOM05D003842 ORTHO05D004436 2.2e-111 406.4 268 76.1
CiPaw.09G003300 Carya illinoinensis HOM05D003842 ORTHO05D004436 8.4e-111 404.4 316 66.8
MD12G1104900 Malus domestica HOM05D003842 ORTHO05D004436 8.4e-111 404.4 305 67.9
Duzib093G0118 Durio zibethinus HOM05D003842 ORTHO05D004436 1.1e-110 404.1 303 70.0
Sed0026042 Sechium edule HOM05D003842 ORTHO05D004436 1.4e-110 403.7 267 75.7
Gorai.006G160800 Gossypium raimondii HOM05D003842 ORTHO05D004436 1.9e-110 403.3 266 76.3
CAN.G1038.13 Capsicum annuum HOM05D003842 ORTHO05D004436 3.2e-110 402.5 268 75.4
MSTRG.26674 Avicennia marina HOM05D003842 ORTHO05D004436 7.1e-110 401.4 272 75.0
FvH4_6g17010 Fragaria vesca HOM05D003842 ORTHO05D004436 1.2e-109 400.6 304 67.8
Nitab4.5_0003314g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 1.2e-109 400.6 256 77.7
Sc20g0005740 Simmondsia chinensis HOM05D003842 ORTHO05D004436 1.2e-109 400.6 267 75.7
FAN05G0072 Fragaria x ananassa HOM05D003842 ORTHO05D004436 1.6e-109 400.2 304 67.8
Lalb_Chr20g0112381 Lupinus albus HOM05D003842 ORTHO05D004436 1.6e-109 400.2 304 66.4
FAN02G1267 Fragaria x ananassa HOM05D003842 ORTHO05D004436 3.5e-109 399.1 304 67.4
FAN05G4099 Fragaria x ananassa HOM05D003842 ORTHO05D004436 4.6e-109 398.7 267 74.2
FAN09G2316 Fragaria x ananassa HOM05D003842 ORTHO05D004436 4.6e-109 398.7 267 74.2
Phvul.001G181800 Phaseolus vulgaris HOM05D003842 ORTHO05D004436 7.9e-109 397.9 304 66.4
PGR142G1271 Punica granatum HOM05D003842 ORTHO05D004436 1.0e-108 397.5 304 67.1
Sabra06G0095000 Salix brachista HOM05D003842 ORTHO05D004436 1.0e-108 397.5 301 69.8
Duzib106G1778 Durio zibethinus HOM05D003842 ORTHO05D004436 1.3e-108 397.1 303 68.6
TAR633G0529 Trochodendron aralioides HOM05D003842 ORTHO05D004436 1.3e-108 397.1 267 74.5
Glyma.19G186900 Glycine max HOM05D003842 ORTHO05D004436 1.8e-108 396.7 304 66.8
arahy.Tifrunner.gnm1.ann1.BQYP5G Arachis hypogaea HOM05D003842 ORTHO05D004436 3.9e-108 395.6 304 66.8
Nn6g35197 Nelumbo nucifera HOM05D003842 ORTHO05D004436 6.7e-108 394.8 267 74.2
RcHm_v2.0_Chr3g0471001 Rosa chinensis HOM05D003842 ORTHO05D004436 6.7e-108 394.8 304 66.4
THA.LOC104818591 Tarenaya hassleriana HOM05D003842 ORTHO05D004436 1.5e-107 393.7 266 75.2
Cc06_g04620 Coffea canephora HOM05D003842 ORTHO05D004436 2.5e-107 392.9 273 71.4
Gohir.A11G323300 Gossypium hirsutum HOM05D003842 ORTHO05D004436 2.5e-107 392.9 303 67.7
Gorai.007G372400 Gossypium raimondii HOM05D003842 ORTHO05D004436 2.5e-107 392.9 303 67.7
PSO063G4107 Papaver somniferum HOM05D003842 ORTHO05D004436 3.3e-107 392.5 267 72.3
MELO3C024492.2 Cucumis melo HOM05D003842 ORTHO05D004436 4.3e-107 392.1 267 72.7
Aqoxy1G01066 Aquilegia oxysepala HOM05D003842 ORTHO05D004436 1.3e-106 390.6 267 73.0
arahy.Tifrunner.gnm1.ann1.CVPH5H Arachis hypogaea HOM05D003842 ORTHO05D004436 1.3e-106 390.6 256 75.4
Carub.0004s1865 Capsella rubella HOM05D003842 ORTHO05D004436 1.3e-106 390.6 266 74.8
PSO339G3623 Papaver somniferum HOM05D003842 ORTHO05D004436 1.3e-106 390.6 273 70.7
AT2G36810 Arabidopsis thaliana HOM05D003842 ORTHO05D004436 1.6e-106 390.2 266 74.4
CsaV3_6G040160 Cucumis sativus L. HOM05D003842 ORTHO05D004436 3.7e-106 389.0 267 72.7
HanXRQChr13g0400661 Helianthus annuus HOM05D003842 ORTHO05D004436 3.7e-106 389.0 273 71.4
Ca_08873_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 1.8e-105 386.7 304 65.1
C04p65510 Brassica napus HOM05D003842 ORTHO05D004436 3.1e-105 386.0 266 74.1
Medtr7g102430 Medicago truncatula HOM05D003842 ORTHO05D004436 3.1e-105 386.0 267 71.9
BolC4t28040H Brassica oleracea HOM05D003842 ORTHO05D004436 4.0e-105 385.6 266 74.1
ECA233G4297 Erigeron canadensis HOM05D003842 ORTHO05D004436 5.3e-105 385.2 267 71.9
Lsat_1_v5_gn_6_28640 Lactuca sativa HOM05D003842 ORTHO05D004436 1.2e-104 384.0 273 71.1
Lj1g0002569 Lotus japonicus HOM05D003842 ORTHO05D004436 4.5e-104 382.1 305 64.6
Sp4g19070 Schrenkiella parvula HOM05D003842 ORTHO05D004436 5.8e-104 381.7 266 73.7
BcaC02g07579 Brassica carinata HOM05D003842 ORTHO05D004436 7.6e-104 381.3 266 73.3
Psat3g040280 Pisum sativum HOM05D003842 ORTHO05D004436 1.7e-103 380.2 306 64.7
AL4G33000 Arabidopsis lyrata HOM05D003842 ORTHO05D004436 4.9e-103 378.6 303 67.0
A04p28120 Brassica napus HOM05D003842 ORTHO05D004436 4.9e-103 378.6 266 72.9
BraA04t18297Z Brassica rapa HOM05D003842 ORTHO05D004436 4.9e-103 378.6 266 72.9
Thhalv10016131m.g Eutrema salsugineum HOM05D003842 ORTHO05D004436 4.9e-103 378.6 257 75.5
Aa31LG5G22020 Aethionema arabicum HOM05D003842 ORTHO05D004436 1.4e-102 377.1 303 66.7
SGA_v2.0_scaffold224G42922 Striga asiatica HOM05D003842 ORTHO05D004436 1.0e-100 370.9 251 74.9
HPP92_022597 Vanilla planifolia HOM05D003842 ORTHO05D004436 5.7e-99 365.2 267 68.2
Atru.chr8.1723 Acer truncatum HOM05D003842 ORTHO05D004436 1.3e-98 364.0 240 77.1
AUR62042272 Chenopodium quinoa HOM05D003842 ORTHO05D004436 1.8e-97 360.1 260 72.7
Eucgr.K02431 Eucalyptus grandis HOM05D003842 ORTHO05D004436 2.6e-96 356.3 231 76.2
Peaxi162Scf00435g01013 Petunia axillaris HOM05D003842 ORTHO05D004436 1.3e-95 354.0 256 71.9
ATR0043G024 Amborella trichopoda HOM05D003842 ORTHO05D004436 2.9e-95 352.8 267 66.7
Rhsim03G0088500 Rhododendron simsii HOM05D003842 ORTHO05D004436 5.5e-94 348.6 289 63.7
Zm00001eb003810 Zea mays HOM05D003842 ORTHO05D004436 7.2e-94 348.2 265 67.5
TPR.G8693 Trifolium pratense HOM05D003842 ORTHO05D004436 2.2e-90 336.7 231 72.7
vmacro07325 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 6.9e-89 331.6 325 57.5
Ca_08928_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 5.0e-87 325.5 304 57.9
ClCG04G009540 Citrullus lanatus HOM05D003842 ORTHO05D004436 6.5e-87 325.1 267 62.9
Nitab4.5_0002535g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 2.7e-85 319.7 201 78.1
Haze_19462 Corylus avellana HOM05D003842 ORTHO05D004436 3.6e-85 319.3 266 67.3
Oeu045240.1 Olea europaea HOM05D003842 ORTHO05D004436 3.6e-85 319.3 198 80.3
Lj3C992G6 Lonicera japonica HOM05D003842 ORTHO05D004436 3.8e-79 299.3 210 74.3
CARHR131190 Cardamine hirsuta HOM05D003842 ORTHO05D004436 3.6e-77 292.7 198 75.8
Ciclev10024523m.g Citrus clementina HOM05D003842 ORTHO05D004436 7.0e-73 278.5 222 67.1
Hma1.2p1_0547F.1_g176420 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 9.4e-70 268.1 180 75.0
MD12G1105200 Malus domestica HOM05D003842 ORTHO05D004436 2.0e-67 260.4 184 71.7
Pp3c2_21970 Physcomitrium patens HOM05D003842 ORTHO05D004436 1.0e-63 248.1 267 49.1
Mapoly0008s0039 Marchantia polymorpha HOM05D003842 ORTHO05D004436 3.2e-62 243.0 266 45.9
Gohir.D11G342400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 5.9e-56 222.2 143 79.0
SMO137G0253 Selaginella moellendorffii HOM05D003842 ORTHO05D004436 1.5e-54 217.6 266 43.6
CBR_g53950 Chara braunii HOM05D003842 ORTHO05D004436 3.0e-52 209.9 265 43.0
Hma1.2p1_0547F.1_g176440 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 5.4e-49 199.1 122 82.8
Medtr7g031800 Medicago truncatula HOM05D003842 ORTHO05D004436 1.1e-46 191.4 122 76.2
Gohir.A09G144350 Gossypium hirsutum HOM05D003842 ORTHO05D004436 6.8e-44 182.2 124 71.8
DCAR_020802 Daucus carota HOM05D003842 ORTHO05D004436 1.3e-42 177.9 157 63.1
FAN14G4083 Fragaria x ananassa HOM05D003842 ORTHO05D004436 2.9e-42 176.8 161 57.8
Gohir.A09G144400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 9.2e-41 171.8 110 77.3
Gohir.D09G140200 Gossypium hirsutum HOM05D003842 ORTHO05D004436 9.2e-41 171.8 110 77.3
SMO207G0008 Selaginella moellendorffii HOM05D003842 ORTHO05D004436 1.3e-31 141.4 266 34.6
QL01p037008 Quercus lobata HOM05D003842 ORTHO05D050616 1.7e-31 141.0 136 58.1
Cpa.g.sc5.149 Carica papaya HOM05D003842 ORTHO05D004436 1.6e-24 117.9 80 73.8
COL.COLO4_26897 Corchorus olitorius HOM05D003842 ORTHO05D004436 7.6e-19 99.0 57 87.7
Gohir.D11G342350 Gossypium hirsutum HOM05D003842 ORTHO05D004436 3.5e-16 90.1 102 51.0
Hma1.2p1_0547F.1_g176430 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 4.6e-16 89.7 52 82.7
Atru.chr8.1733 Acer truncatum HOM05D003842 ORTHO05D004436 1.3e-15 88.2 65 67.7
Ciclev10023867m.g Citrus clementina HOM05D003842 ORTHO05D004436 8.7e-15 85.5 52 76.9
Actinidia28925 Actinidia chinensis HOM05D003842 ORTHO05D004436 1.5e-14 84.7 51 80.4
Hma1.2p1_0705F.1_g207000 Hydrangea macrophylla HOM05D000895 ORTHO05D011925 5.6e-14 82.8 57 71.9
Lsat_1_v5_gn_9_56200 Lactuca sativa HOM05D003842 ORTHO05D004436 1.2e-13 81.6 56 62.5
Cpa.g.sc5.147 Carica papaya HOM05D003842 ORTHO05D004436 2.8e-13 80.5 51 72.5
Lsat_1_v5_gn_3_105861 Lactuca sativa HOM05D001499 ORTHO05D001560 3.6e-13 80.1 56 62.5
Lsat_1_v5_gn_9_14660 Lactuca sativa HOM05D003842 ORTHO05D004436 1.1e-12 78.6 56 60.7
arahy.Tifrunner.gnm1.ann1.1KP53S Arachis hypogaea HOM05D003842 ORTHO05D004436 3.1e-12 77.0 52 67.3
arahy.Tifrunner.gnm1.ann1.Z63BRR Arachis hypogaea HOM05D003842 ORTHO05D004436 3.1e-12 77.0 56 64.3
Actinidia28924 Actinidia chinensis HOM05D003842 ORTHO05D004436 3.4e-11 73.6 57 57.9
arahy.Tifrunner.gnm1.ann1.G8MIGD Arachis hypogaea HOM05D003842 ORTHO05D004436 1.3e-10 71.6 65 50.8
TPR.G6 Trifolium pratense HOM05D003842 ORTHO05D004436 6.0e-08 62.8 40 72.5
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 9.6e-06 55.5 105 33.3


User provided reference genes

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