Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20129 Selenicereus undatus HOM05D000290 ORTHO05D007415 1.7e-86 322.8 185 100.0
AUR62037660 Chenopodium quinoa HOM05D000290 ORTHO05D007415 2.2e-44 183.0 179 55.9
AUR62041044 Chenopodium quinoa HOM05D000290 ORTHO05D007415 1.5e-42 176.8 179 64.2
EL10Ac2g03246 Beta vulgaris HOM05D000290 ORTHO05D007415 1.7e-41 173.3 172 54.7
Ah.16g106370 Amaranthus hybridus HOM05D000290 ORTHO05D007415 9.4e-40 167.5 168 53.6
Sc20g0001930 Simmondsia chinensis HOM05D000290 ORTHO05D007415 4.5e-34 148.7 181 49.2
GSVIVG01016296001 Vitis vinifera HOM05D000290 ORTHO05D007415 9.7e-29 131.0 199 39.7
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.8e-27 126.7 181 39.2
Thecc.10G071500 Theobroma cacao HOM05D000290 ORTHO05D007415 1.8e-27 126.7 178 41.6
Cc09_g02000 Coffea canephora HOM05D000290 ORTHO05D007415 7.0e-27 124.8 180 41.1
Hma1.2p1_0063F.1_g034380 Hydrangea macrophylla HOM05D000290 ORTHO05D007415 2.0e-26 123.2 196 38.8
QL08p056306 Quercus lobata HOM05D000290 ORTHO05D007415 5.9e-26 121.7 171 50.3
Gohir.A10G206900 Gossypium hirsutum HOM05D000290 ORTHO05D007415 7.7e-26 121.3 201 38.3
Gohir.D10G215000 Gossypium hirsutum HOM05D000290 ORTHO05D007415 1.0e-25 120.9 201 37.8
Gorai.011G240500 Gossypium raimondii HOM05D000290 ORTHO05D007415 1.0e-25 120.9 179 41.3
CiPaw.02G174700 Carya illinoinensis HOM05D000290 ORTHO05D007415 2.2e-25 119.8 173 41.0
Duzib106G1672 Durio zibethinus HOM05D000290 ORTHO05D007415 2.2e-25 119.8 201 36.8
MD07G1176000 Malus domestica HOM05D000290 ORTHO05D007415 2.2e-25 119.8 194 38.7
Nitab4.5_0000233g0060 Nicotiana tabacum HOM05D000290 ORTHO05D007415 6.5e-25 118.2 176 39.8
Nitab4.5_0001448g0010 Nicotiana tabacum HOM05D000290 ORTHO05D007415 8.5e-25 117.9 176 40.3
TAR636G1312 Trochodendron aralioides HOM05D000290 ORTHO05D007415 8.5e-25 117.9 174 38.5
Prupe.8G142600 Prunus persica HOM05D000290 ORTHO05D007415 2.5e-24 116.3 188 39.4
CANSAT56G0046 Cannabis sativa HOM05D000290 ORTHO05D007415 2.1e-23 113.2 179 36.9
Cfa001614 Carpinus fangiana HOM05D000290 ORTHO05D007415 3.6e-23 112.5 178 37.1
Eucgr.G02820 Eucalyptus grandis HOM05D000290 ORTHO05D007415 4.7e-23 112.1 173 38.7
HanXRQChr09g0246431 Helianthus annuus HOM05D000290 ORTHO05D007415 4.7e-23 112.1 163 40.5
PGR142G4180 Punica granatum HOM05D000290 ORTHO05D007415 4.7e-23 112.1 157 41.4
Glyma.20G179100 Glycine max HOM05D000290 ORTHO05D007415 6.1e-23 111.7 197 34.5
CSS0015563 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007415 1.4e-22 110.5 194 34.5
CSS0025800 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007415 1.4e-22 110.5 194 34.5
Potri.010G221000 Populus trichocarpa HOM05D000290 ORTHO05D007415 1.4e-22 110.5 175 37.1
TWI63G0995 Tripterygium wilfordii HOM05D000290 ORTHO05D007415 1.4e-22 110.5 200 37.0
VMungo0720G0458 Vigna mungo HOM05D000290 ORTHO05D007415 1.4e-22 110.5 196 34.2
COL.COLO4_23704 Corchorus olitorius HOM05D000290 ORTHO05D007415 2.3e-22 109.8 202 36.6
Nn2g10759 Nelumbo nucifera HOM05D000290 ORTHO05D007415 3.0e-22 109.4 187 38.5
Phvul.007G093900 Phaseolus vulgaris HOM05D000290 ORTHO05D007415 6.7e-22 108.2 197 39.6
Ciclev10030711m.g Citrus clementina HOM05D000290 ORTHO05D007415 8.8e-22 107.8 195 36.9
Atru.chr12.734 Acer truncatum HOM05D000290 ORTHO05D007415 1.2e-21 107.5 176 41.5
RcHm_v2.0_Chr1g0363651 Rosa chinensis HOM05D000290 ORTHO05D007415 1.2e-21 107.5 173 35.3
FvH4_7g19760 Fragaria vesca HOM05D000290 ORTHO05D007415 1.5e-21 107.1 181 35.9
FAN06G5088 Fragaria x ananassa HOM05D000290 ORTHO05D007415 1.5e-21 107.1 181 35.9
Psat6g185080 Pisum sativum HOM05D000290 ORTHO05D007415 1.5e-21 107.1 186 38.2
FAN03G2244 Fragaria x ananassa HOM05D000290 ORTHO05D007415 2.6e-21 106.3 173 35.3
Solyc04g049390.3 Solanum lycopersicum HOM05D000290 ORTHO05D007415 2.6e-21 106.3 176 37.5
Sabra10G0170700 Salix brachista HOM05D000290 ORTHO05D007415 3.3e-21 105.9 175 37.1
Sopen04g019370 Solanum pennellii HOM05D000290 ORTHO05D007415 3.3e-21 105.9 176 37.5
MSTRG.369 Avicennia marina HOM05D000290 ORTHO05D007415 4.4e-21 105.5 171 37.4
Manes.07G104400 Manihot esculenta HOM05D000290 ORTHO05D007415 4.4e-21 105.5 177 35.0
Peaxi162Scf00272g00222 Petunia axillaris HOM05D000290 ORTHO05D007415 4.4e-21 105.5 176 36.9
Glyma.10G212000 Glycine max HOM05D000290 ORTHO05D007415 7.5e-21 104.8 197 32.0
TPR.G1810 Trifolium pratense HOM05D000290 ORTHO05D007415 7.5e-21 104.8 182 36.8
Thhalv10016257m.g Eutrema salsugineum HOM05D000290 ORTHO05D007415 1.7e-20 103.6 159 38.4
Lsat_1_v5_gn_9_68761 Lactuca sativa HOM05D000290 ORTHO05D007415 1.7e-20 103.6 174 40.2
Lj1A916G22 Lonicera japonica HOM05D000290 ORTHO05D007415 2.2e-20 103.2 163 37.4
Medtr1g095480 Medicago truncatula HOM05D000290 ORTHO05D007415 3.7e-20 102.4 185 33.0
Sp4g21520 Schrenkiella parvula HOM05D000290 ORTHO05D007415 3.7e-20 102.4 159 37.1
AL4G36490 Arabidopsis lyrata HOM05D000290 ORTHO05D007415 6.3e-20 101.7 159 36.5
Cpa.g.sc53.63 Carica papaya HOM05D000290 ORTHO05D007415 6.3e-20 101.7 175 34.9
Oeu034811.1 Olea europaea HOM05D000290 ORTHO05D007415 8.2e-20 101.3 161 36.6
ECA232G0301 Erigeron canadensis HOM05D000290 ORTHO05D007415 1.1e-19 100.9 181 35.9
THA.LOC104809972 Tarenaya hassleriana HOM05D000290 ORTHO05D007415 1.4e-19 100.5 165 37.0
CAN.G29.6 Capsicum annuum HOM05D000290 ORTHO05D007415 1.8e-19 100.1 176 34.7
AT2G39190 Arabidopsis thaliana HOM05D000290 ORTHO05D007415 2.4e-19 99.8 159 36.5
Lj5g0003555 Lotus japonicus HOM05D000290 ORTHO05D007415 2.4e-19 99.8 198 34.3
SalBow3G1677 Salvia bowleyana HOM05D000290 ORTHO05D007415 7.0e-19 98.2 173 33.5
SGA_v2.0_scaffold341G49361 Striga asiatica HOM05D000290 ORTHO05D007415 1.6e-18 97.1 177 32.2
Aqoxy1G01252 Aquilegia oxysepala HOM05D000290 ORTHO05D007415 3.5e-18 95.9 186 34.4
BcaB01g03617 Brassica carinata HOM05D000290 ORTHO05D007415 3.5e-18 95.9 154 34.4
Ca_10576_v3 Cicer arietinum L. HOM05D000290 ORTHO05D007415 4.5e-18 95.5 186 38.7
DCAR_006445 Daucus carota HOM05D000290 ORTHO05D007415 5.9e-18 95.1 158 36.7
ATR0115G028 Amborella trichopoda HOM05D000290 ORTHO05D007415 7.7e-18 94.7 167 35.9
Lalb_Chr06g0162261 Lupinus albus HOM05D000290 ORTHO05D007415 7.7e-18 94.7 196 39.8
Haze_16906 Corylus avellana HOM05D000290 ORTHO05D007415 1.3e-17 94.0 224 30.8
arahy.Tifrunner.gnm1.ann1.IU7X6X Arachis hypogaea HOM05D000290 ORTHO05D007415 1.7e-17 93.6 170 35.9
Actinidia03052 Actinidia chinensis HOM05D000290 ORTHO05D007415 2.9e-17 92.8 155 36.8
Carub.0004s2123 Capsella rubella HOM05D000290 ORTHO05D007415 2.9e-17 92.8 159 35.2
arahy.Tifrunner.gnm1.ann1.AS9ABP Arachis hypogaea HOM05D000290 ORTHO05D007415 5.0e-17 92.0 170 35.9
PSO339G6283 Papaver somniferum HOM05D000290 ORTHO05D007415 6.5e-17 91.7 174 33.9
Aa31LG5G20180 Aethionema arabicum HOM05D000290 ORTHO05D007415 1.5e-16 90.5 155 34.8
C03p25970 Brassica napus HOM05D000290 ORTHO05D007415 1.5e-16 90.5 159 34.0
BcaB01g03651 Brassica carinata HOM05D000290 ORTHO05D007415 2.5e-16 89.7 159 33.3
BolC3t14982H Brassica oleracea HOM05D000290 ORTHO05D007415 2.5e-16 89.7 159 33.3
Migut.F01770 Erythranthe guttata HOM05D000290 ORTHO05D007415 3.2e-16 89.4 165 32.1
A03p21900 Brassica napus HOM05D000290 ORTHO05D007415 7.2e-16 88.2 159 32.1
BraA03t11426Z Brassica rapa HOM05D000290 ORTHO05D007415 7.2e-16 88.2 159 32.1
Sed0009428 Sechium edule HOM05D000290 ORTHO05D007415 1.2e-15 87.4 187 30.5
MELO3C012436.2 Cucumis melo HOM05D000290 ORTHO05D007415 2.1e-15 86.7 170 32.4
CsaV3_5G036380 Cucumis sativus L. HOM05D000290 ORTHO05D007415 2.1e-15 86.7 170 32.4
PSO063G6866 Papaver somniferum HOM05D000290 ORTHO05D007415 4.7e-15 85.5 174 32.8
ClCG05G020930 Citrullus lanatus HOM05D000290 ORTHO05D007415 1.4e-14 84.0 172 31.4
unitig_22.g5127 Utricularia gibba HOM05D000290 ORTHO05D007415 1.5e-13 80.5 193 29.5
Rhsim09G0040800 Rhododendron simsii HOM05D000290 ORTHO05D007415 2.0e-13 80.1 221 29.0
Rhsim03G0124000 Rhododendron simsii HOM05D000290 ORTHO05D007415 1.3e-12 77.4 121 34.7
Rhsim03G0124100 Rhododendron simsii HOM05D000290 ORTHO05D007415 1.3e-12 77.4 121 34.7
CDE08G1592 Ceratophyllum demersum HOM05D000290 ORTHO05D007415 9.1e-11 71.2 174 25.9
Os02g0805800 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D007415 2.5e-08 63.2 142 31.7
HPP92_028088 Vanilla planifolia HOM05D000290 ORTHO05D051561 3.2e-08 62.8 149 32.9
SEGI_30113 Sequoiadendron giganteum HOM05D000290 ORTHO05D007415 4.7e-07 58.9 154 29.2
Lalb_Chr02g0142071 Lupinus albus HOM05D000290 ORTHO05D007415 3.0e-06 56.2 85 51.8


User provided reference genes

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