Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 0.0e+00 2085.8 1060 100.0
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 0.0e+00 1385.5 1064 68.0
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1377.8 1038 68.0
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 0.0e+00 1337.8 1035 66.2
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 1334.7 1037 66.0
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 0.0e+00 1333.5 1053 64.2
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 0.0e+00 1326.6 1040 65.3
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 0.0e+00 1320.4 1053 64.4
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1316.2 937 72.5
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 0.0e+00 1305.0 1033 65.5
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 0.0e+00 1302.7 1051 64.5
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1300.4 1033 64.5
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1300.0 1032 64.7
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 0.0e+00 1297.3 1033 63.5
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 0.0e+00 1296.6 1051 63.7
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1296.2 1032 64.6
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1294.6 1039 64.2
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 0.0e+00 1294.3 1037 64.2
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1292.7 1039 64.0
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 0.0e+00 1283.9 1045 63.2
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 0.0e+00 1283.5 1048 63.3
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1281.5 1055 62.9
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1281.5 1055 62.9
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 0.0e+00 1280.0 1049 63.6
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 0.0e+00 1279.2 1039 63.2
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1278.8 1052 62.5
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 0.0e+00 1278.5 1032 63.8
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 0.0e+00 1276.5 1044 62.8
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 0.0e+00 1276.2 1047 63.1
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 0.0e+00 1274.6 1054 63.3
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 0.0e+00 1274.2 1034 63.5
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 0.0e+00 1272.3 1054 62.5
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 0.0e+00 1270.4 1050 62.2
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 0.0e+00 1267.7 1043 63.3
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 0.0e+00 1264.6 1047 62.3
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 0.0e+00 1264.2 1025 64.6
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1259.6 1035 62.4
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1259.2 1041 62.2
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 0.0e+00 1256.9 1099 61.0
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 0.0e+00 1256.5 1050 61.7
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 0.0e+00 1256.1 1053 61.5
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 0.0e+00 1255.7 1054 61.9
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 0.0e+00 1252.7 1036 62.2
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 0.0e+00 1246.9 1049 60.9
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 0.0e+00 1246.1 932 67.9
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1244.2 1050 60.9
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 0.0e+00 1244.2 1055 60.9
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 0.0e+00 1243.0 1055 60.6
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 0.0e+00 1242.3 1036 61.5
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 0.0e+00 1240.3 1054 61.3
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1239.9 1055 60.9
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 0.0e+00 1238.8 1045 60.4
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 0.0e+00 1238.4 1035 61.8
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 0.0e+00 1235.7 1035 62.4
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1233.8 1032 61.6
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 0.0e+00 1233.4 978 65.2
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 0.0e+00 1233.0 1055 60.0
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1232.2 1055 60.6
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 0.0e+00 1228.4 1026 62.9
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1226.8 1033 60.6
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1224.9 1032 60.9
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1223.8 1032 60.7
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1223.0 1049 60.3
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 0.0e+00 1223.0 1029 60.6
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1221.8 1051 59.8
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1221.5 1051 59.8
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1217.2 940 67.8
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1209.5 1035 61.4
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1209.1 1100 58.1
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1203.7 1035 61.4
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1199.1 1053 59.1
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1189.1 1069 58.3
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 0.0e+00 1188.3 1117 57.7
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 0.0e+00 1141.3 1061 56.6
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1139.8 1038 58.1
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1139.4 1070 56.7
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 0.0e+00 1123.6 882 65.5
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 0.0e+00 1107.8 1052 57.2
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1092.8 1060 55.8
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1078.9 863 62.3
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 0.0e+00 1075.8 886 61.4
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 2.6e-288 995.7 748 64.2
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 1.4e-284 983.4 869 60.8
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 5.7e-283 978.0 1030 49.5
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 6.3e-274 948.0 1037 48.5
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 1.5e-267 926.8 1037 48.3
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 1.1e-262 910.6 712 63.8
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 2.3e-260 902.9 692 63.4
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 7.1e-241 838.2 703 62.0
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 4.6e-240 835.5 1032 44.6
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 1.1e-238 830.9 650 66.9
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 4.4e-227 792.3 578 65.6
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 3.9e-223 779.2 758 55.9
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 4.0e-212 742.7 774 52.7
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 2.7e-200 703.4 776 50.5
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 9.7e-198 694.9 485 67.0
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 1.0e-194 684.9 1023 40.7
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 7.9e-192 675.2 679 54.6
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 1.5e-187 661.0 637 54.0
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.5e-177 627.9 642 54.4
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 1.8e-164 584.3 387 71.1
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.0e-143 515.4 934 36.7
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 6.0e-139 499.6 405 59.8
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 7.3e-137 492.7 313 72.8
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 9.9e-126 455.7 300 71.3
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 1.4e-124 451.8 1065 31.9
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 8.1e-112 409.5 415 54.7
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.7e-106 391.7 306 60.1
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 3.7e-72 277.7 241 65.6
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 3.4e-70 271.2 199 65.8
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 6.8e-50 203.8 143 66.4
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 4.5e-46 191.0 108 76.9
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 2.4e-39 168.7 206 51.9
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 1.6e-38 166.0 210 50.5
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 5.9e-30 137.5 97 71.1
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 1.3e-24 119.8 128 57.0
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.1e-23 116.7 67 77.6
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 3.9e-21 108.2 67 76.1
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 3.9e-21 108.2 67 76.1
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 8.6e-21 107.1 67 76.1
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 8.6e-21 107.1 67 76.1
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 8.6e-21 107.1 67 76.1
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.9e-20 105.9 67 74.6
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 7.3e-20 104.0 67 74.6
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.2e-19 103.2 67 74.6
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.6e-19 102.8 67 74.6
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.5e-17 96.3 93 58.1
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 1.5e-17 96.3 93 58.1
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 2.0e-17 95.9 79 64.6
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 3.7e-16 91.7 94 56.4
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 1.4e-15 89.7 72 62.5
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 5.4e-15 87.8 93 54.8
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 6.6e-13 80.9 59 67.8
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 6.6e-13 80.9 59 67.8
RcHm_v2.0_Chr7g0219551 Rosa chinensis HOM05D005389 ORTHO05D008484 9.5e-12 77.0 43 83.7
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 4.7e-11 74.7 339 23.9
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 4.7e-11 74.7 336 25.9
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 1.4e-10 73.2 74 48.6
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 2.3e-10 72.4 48 66.7
Hund16537 Selenicereus undatus HOM05D006593 ORTHO05D008512 1.5e-09 69.7 343 25.7
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 5.8e-09 67.8 36 86.1
Carub.0004s0170 Capsella rubella HOM05D006593 ORTHO05D008512 7.6e-09 67.4 331 24.5
HanXRQChr17g0550591 Helianthus annuus HOM05D006593 ORTHO05D008512 2.2e-08 65.9 335 24.5
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 2.9e-08 65.5 53 67.9
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 4.9e-08 64.7 39 82.1
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 4.9e-08 64.7 39 82.1
BcaB08g35096 Brassica carinata HOM05D006593 ORTHO05D008512 8.4e-08 63.9 335 23.6
A09p57440 Brassica napus HOM05D006593 ORTHO05D008512 9.2e-07 60.5 336 22.0
BraA09t41136Z Brassica rapa HOM05D006593 ORTHO05D008512 9.2e-07 60.5 336 22.0
BolC8t51623H Brassica oleracea HOM05D006593 ORTHO05D008512 1.6e-06 59.7 177 26.0
BcaC07g41050 Brassica carinata HOM05D006593 ORTHO05D008512 2.7e-06 58.9 175 25.1
C08p40530 Brassica napus HOM05D006593 ORTHO05D008512 2.7e-06 58.9 175 25.1
Actinidia21906 Actinidia chinensis HOM05D004630 ORTHO05D005727 6.0e-06 57.8 153 26.8


User provided reference genes

Program Settings