Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19962 Selenicereus undatus HOM05D002011 ORTHO05D001948 3.9e-85 318.2 169 100.0
AUR62012450 Chenopodium quinoa HOM05D002011 ORTHO05D001948 1.3e-32 143.7 148 64.2
EL10Ac2g04150 Beta vulgaris HOM05D002011 ORTHO05D001948 2.1e-30 136.3 142 59.9
Hund03478 Selenicereus undatus HOM05D002011 ORTHO05D001948 4.4e-28 128.6 144 59.0
AUR62031573 Chenopodium quinoa HOM05D002011 ORTHO05D001948 3.7e-27 125.6 149 59.1
Hund29456 Selenicereus undatus HOM05D002011 ORTHO05D001948 8.3e-27 124.4 151 57.0
Hund29458 Selenicereus undatus HOM05D002011 ORTHO05D001948 8.3e-27 124.4 151 57.0
Ah.16g104840 Amaranthus hybridus HOM05D002011 ORTHO05D001948 1.1e-26 124.0 134 62.7
Sc23g0006520 Simmondsia chinensis HOM05D002011 ORTHO05D001948 4.7e-22 108.6 132 53.8
Sc09g0010370 Simmondsia chinensis HOM05D002011 ORTHO05D001948 6.8e-21 104.8 131 48.9
Actinidia23086 Actinidia chinensis HOM05D002011 ORTHO05D001948 1.3e-19 100.5 142 45.1
Actinidia14104 Actinidia chinensis HOM05D002011 ORTHO05D001948 3.2e-18 95.9 144 45.8
Manes.16G126300 Manihot esculenta HOM05D002011 ORTHO05D001948 9.2e-18 94.4 146 43.2
Dinv03417 Davidia involucrata HOM05D002011 ORTHO05D001948 6.0e-17 91.7 135 44.4
Duzib187G1916 Durio zibethinus HOM05D002011 ORTHO05D001948 6.0e-17 91.7 165 39.4
COL.COLO4_18921 Corchorus olitorius HOM05D002011 ORTHO05D001948 1.0e-16 90.9 140 43.6
vmacro11223 Vaccinium macrocarpon HOM05D002011 ORTHO05D001948 1.3e-16 90.5 142 42.3
Ah.10g035660 Amaranthus hybridus HOM05D002011 ORTHO05D001948 1.7e-16 90.1 148 49.3
GSVIVG01035917001 Vitis vinifera HOM05D002011 ORTHO05D001948 3.9e-16 89.0 162 40.7
Cpa.g.sc127.1 Carica papaya HOM05D002011 ORTHO05D001948 5.1e-16 88.6 140 41.4
TAR636G1642 Trochodendron aralioides HOM05D002011 ORTHO05D001948 6.6e-16 88.2 155 43.2
CiPaw.08G008100 Carya illinoinensis HOM05D002011 ORTHO05D001948 1.5e-15 87.0 172 43.6
MD08G1154000 Malus domestica HOM05D002011 ORTHO05D001948 2.5e-15 86.3 157 42.0
QL02p020109 Quercus lobata HOM05D002011 ORTHO05D001948 4.3e-15 85.5 158 41.8
Prupe.1G486600 Prunus persica HOM05D002011 ORTHO05D001948 5.6e-15 85.1 156 42.9
Actinidia22311 Actinidia chinensis HOM05D002011 ORTHO05D001948 9.5e-15 84.3 136 42.6
Ciclev10009242m.g Citrus clementina HOM05D002011 ORTHO05D001948 1.6e-14 83.6 148 40.5
Manes.03G011400 Manihot esculenta HOM05D002011 ORTHO05D001948 1.6e-14 83.6 162 38.9
TAR626G1639 Trochodendron aralioides HOM05D002011 ORTHO05D001948 3.6e-14 82.4 155 44.5
Atru.chr7.2505 Acer truncatum HOM05D002011 ORTHO05D001948 4.7e-14 82.0 140 40.7
TWI63G1833 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 4.7e-14 82.0 135 44.4
Sed0021865 Sechium edule HOM05D002011 ORTHO05D001948 8.1e-14 81.3 149 42.3
ClCG05G016560 Citrullus lanatus HOM05D002011 ORTHO05D001948 1.1e-13 80.9 162 42.0
DCAR_003008 Daucus carota HOM05D002011 ORTHO05D001948 1.1e-13 80.9 140 41.4
Eucgr.C01684 Eucalyptus grandis HOM05D002011 ORTHO05D001948 1.4e-13 80.5 146 39.0
MD15G1131300 Malus domestica HOM05D002011 ORTHO05D001948 1.4e-13 80.5 157 41.4
Rhsim02G0206600 Rhododendron simsii HOM05D002011 ORTHO05D001948 1.4e-13 80.5 142 38.0
CSS0035080 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 3.1e-13 79.3 148 45.3
Nn8g39727 Nelumbo nucifera HOM05D002011 ORTHO05D001948 3.1e-13 79.3 158 41.8
CSS0040463 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 8.9e-13 77.8 140 37.9
CiPaw.07G227200 Carya illinoinensis HOM05D002011 ORTHO05D001948 8.9e-13 77.8 158 38.6
MELO3C016985.2 Cucumis melo HOM05D002011 ORTHO05D001948 8.9e-13 77.8 135 44.4
CsaV3_4G036820 Cucumis sativus L. HOM05D002011 ORTHO05D001948 1.2e-12 77.4 168 41.1
Glyma.06G065100 Glycine max HOM05D002011 ORTHO05D001948 1.5e-12 77.0 132 37.1
Gohir.D07G034500 Gossypium hirsutum HOM05D002011 ORTHO05D001948 1.5e-12 77.0 124 42.7
Cfa013098 Carpinus fangiana HOM05D002011 ORTHO05D001948 2.0e-12 76.6 156 41.0
Potri.006G259700 Populus trichocarpa HOM05D002011 ORTHO05D001948 2.6e-12 76.3 144 36.8
Actinidia13206 Actinidia chinensis HOM05D002011 ORTHO05D001948 3.4e-12 75.9 133 41.4
Sed0017330 Sechium edule HOM05D002011 ORTHO05D001948 7.5e-12 74.7 146 39.0
FAN27G3054 Fragaria x ananassa HOM05D002011 ORTHO05D001948 9.9e-12 74.3 160 39.4
Gorai.001G036200 Gossypium raimondii HOM05D002011 ORTHO05D001948 9.9e-12 74.3 124 41.9
Sabra06G0202900 Salix brachista HOM05D002011 ORTHO05D001948 9.9e-12 74.3 139 37.4
FAN15G2620 Fragaria x ananassa HOM05D002011 ORTHO05D001948 1.3e-11 73.9 160 40.6
RcHm_v2.0_Chr6g0297181 Rosa chinensis HOM05D002011 ORTHO05D001948 1.7e-11 73.6 164 40.9
TWI32G0803 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 1.7e-11 73.6 139 39.6
Hma1.2p1_0228F.1_g096600 Hydrangea macrophylla HOM05D002011 ORTHO05D001948 2.9e-11 72.8 144 36.1
FAN24G0280 Fragaria x ananassa HOM05D002011 ORTHO05D001948 3.7e-11 72.4 160 39.4
Thecc.09G019200 Theobroma cacao HOM05D002011 ORTHO05D001948 3.7e-11 72.4 127 42.5
Duzib168G0584 Durio zibethinus HOM05D002011 ORTHO05D001948 4.9e-11 72.0 142 38.0
Glyma.04G063900 Glycine max HOM05D002011 ORTHO05D001948 8.3e-11 71.2 140 35.7
Nitab4.5_0005934g0050 Nicotiana tabacum HOM05D002011 ORTHO05D001948 8.3e-11 71.2 143 42.0
Phvul.009G090200 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 8.3e-11 71.2 132 35.6
TWI34G1253 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 8.3e-11 71.2 128 40.6
Haze_21454 Corylus avellana HOM05D002011 ORTHO05D001948 1.9e-10 70.1 144 38.2
FAN20G1038 Fragaria x ananassa HOM05D002011 ORTHO05D001948 1.9e-10 70.1 150 39.3
Sc06g0000440 Simmondsia chinensis HOM05D002011 ORTHO05D001948 1.9e-10 70.1 128 43.0
Sed0005888 Sechium edule HOM05D002011 ORTHO05D001948 2.4e-10 69.7 134 39.6
arahy.Tifrunner.gnm1.ann1.KT90FJ Arachis hypogaea HOM05D002011 ORTHO05D001948 3.2e-10 69.3 155 35.5
SalBow7G0591 Salvia bowleyana HOM05D002011 ORTHO05D001948 3.2e-10 69.3 136 39.7
MSTRG.22780 Avicennia marina HOM05D002011 ORTHO05D001948 4.1e-10 68.9 133 42.1
Dinv23313 Davidia involucrata HOM05D002011 ORTHO05D001948 4.1e-10 68.9 141 39.7
Gohir.A07G030600 Gossypium hirsutum HOM05D002011 ORTHO05D001948 4.1e-10 68.9 122 39.3
TAR383G0822 Trochodendron aralioides HOM05D002011 ORTHO05D001948 7.1e-10 68.2 146 41.1
ClCG08G013560 Citrullus lanatus HOM05D002011 ORTHO05D001948 9.2e-10 67.8 146 37.7
VMungo1309G3164 Vigna mungo HOM05D002011 ORTHO05D001948 9.2e-10 67.8 134 35.8
CiPaw.01G252000 Carya illinoinensis HOM05D002011 ORTHO05D001948 1.6e-09 67.0 153 35.9
Nn2g12257 Nelumbo nucifera HOM05D002011 ORTHO05D001948 2.1e-09 66.6 141 41.1
RcHm_v2.0_Chr2g0133521 Rosa chinensis HOM05D002011 ORTHO05D001948 2.1e-09 66.6 154 39.0
THA.LOC104799044 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 2.1e-09 66.6 134 38.8
arahy.Tifrunner.gnm1.ann1.97EW8A Arachis hypogaea HOM05D002011 ORTHO05D001948 2.7e-09 66.2 156 32.7
CSS0039956 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 3.5e-09 65.9 158 41.1
FAN09G3914 Fragaria x ananassa HOM05D002011 ORTHO05D001948 3.5e-09 65.9 151 40.4
MD17G1219700 Malus domestica HOM05D002011 ORTHO05D001948 3.5e-09 65.9 147 37.4
Peaxi162Scf00332g00224 Petunia axillaris HOM05D002011 ORTHO05D001948 4.6e-09 65.5 140 40.7
FvH4_6g29000 Fragaria vesca HOM05D002011 ORTHO05D001948 7.8e-09 64.7 151 39.7
FAN14G4768 Fragaria x ananassa HOM05D002011 ORTHO05D001948 7.8e-09 64.7 151 39.7
MD09G1223300 Malus domestica HOM05D002011 ORTHO05D001948 7.8e-09 64.7 152 38.8
Ciclev10026302m.g Citrus clementina HOM05D002011 ORTHO05D001948 1.0e-08 64.3 153 38.6
VMungo1080G1625 Vigna mungo HOM05D002011 ORTHO05D001948 1.3e-08 63.9 142 41.5
FAN02G4077 Fragaria x ananassa HOM05D002011 ORTHO05D001948 1.7e-08 63.5 151 39.7
Sopen03g036120 Solanum pennellii HOM05D002011 ORTHO05D001948 2.3e-08 63.2 169 34.3
CsaV3_2G032320 Cucumis sativus L. HOM05D002011 ORTHO05D001948 3.0e-08 62.8 148 33.8
Lalb_Chr23g0268371 Lupinus albus HOM05D002011 ORTHO05D001948 3.0e-08 62.8 168 33.3
Solyc03g117210.4 Solanum lycopersicum HOM05D002011 ORTHO05D001948 3.0e-08 62.8 169 34.3
THA.LOC104803640 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 3.9e-08 62.4 141 38.3
Gohir.A05G057100 Gossypium hirsutum HOM05D002011 ORTHO05D001948 5.1e-08 62.0 140 35.7
Lj3g0008755 Lotus japonicus HOM05D002011 ORTHO05D001948 5.1e-08 62.0 158 34.2
Prupe.3G095200 Prunus persica HOM05D002011 ORTHO05D001948 5.1e-08 62.0 145 35.2
PGR102G1217 Punica granatum HOM05D002011 ORTHO05D001948 5.1e-08 62.0 140 36.4
FAN05G1371 Fragaria x ananassa HOM05D002011 ORTHO05D001948 6.6e-08 61.6 151 39.1
FAN05G4451 Fragaria x ananassa HOM05D002011 ORTHO05D001948 6.6e-08 61.6 151 39.1
Ca_15760_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 1.1e-07 60.8 155 34.2
PGSC0003DMG400014198 Solanum tuberosum HOM05D002011 ORTHO05D001948 1.1e-07 60.8 134 37.3
MELO3C011282.2 Cucumis melo HOM05D002011 ORTHO05D001948 1.5e-07 60.5 126 35.7
ECA246G3333 Erigeron canadensis HOM05D006351 ORTHO05D007796 1.9e-07 60.1 136 33.8
Cpa.g.sc10.124 Carica papaya HOM05D002011 ORTHO05D001948 2.5e-07 59.7 152 36.8
TPR.G8906 Trifolium pratense HOM05D002011 ORTHO05D001948 2.5e-07 59.7 149 36.2
PSO782G4733 Papaver somniferum HOM05D002011 ORTHO05D001948 3.3e-07 59.3 150 32.7
Phvul.005G181100 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 3.3e-07 59.3 138 37.7
PGR044G0932 Punica granatum HOM05D002011 ORTHO05D001948 3.3e-07 59.3 71 45.1
arahy.Tifrunner.gnm1.ann1.ZE8HCZ Arachis hypogaea HOM05D002011 ORTHO05D001948 4.3e-07 58.9 145 34.5
Thhalv10025671m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 4.3e-07 58.9 142 33.8
Psat5g036760 Pisum sativum HOM05D002011 ORTHO05D001948 4.3e-07 58.9 136 31.6
MSTRG.9415 Avicennia marina HOM05D002011 ORTHO05D001948 5.6e-07 58.5 140 37.1
Lalb_Chr08g0244281 Lupinus albus HOM05D002011 ORTHO05D001948 5.6e-07 58.5 134 32.8
Sed0008145 Sechium edule HOM05D002011 ORTHO05D001948 5.6e-07 58.5 144 35.4
SGA_v2.0_scaffold5G02744 Striga asiatica HOM05D002011 ORTHO05D001948 5.6e-07 58.5 136 37.5
Cc04_g04820 Coffea canephora HOM05D002011 ORTHO05D001948 7.3e-07 58.2 163 36.8
HanXRQChr09g0274671 Helianthus annuus HOM05D002011 ORTHO05D001948 7.3e-07 58.2 71 49.3
Medtr3g106340 Medicago truncatula HOM05D002011 ORTHO05D001948 7.3e-07 58.2 132 31.1
Psat5g304320 Pisum sativum HOM05D002011 ORTHO05D001948 9.5e-07 57.8 64 54.7
SGA_v2.0_scaffold37G14736 Striga asiatica HOM05D002011 ORTHO05D001948 9.5e-07 57.8 132 37.1
Potri.017G053900 Populus trichocarpa HOM05D002011 ORTHO05D001948 1.2e-06 57.4 167 31.7
Glyma.15G004800 Glycine max HOM05D002011 ORTHO05D001948 1.6e-06 57.0 166 36.7
Aqoxy7G03522 Aquilegia oxysepala HOM05D002011 ORTHO05D001948 2.1e-06 56.6 159 29.6
arahy.Tifrunner.gnm1.ann1.KH3NQE Arachis hypogaea HOM05D002011 ORTHO05D001948 2.1e-06 56.6 145 33.8
Lj1g0007627 Lotus japonicus HOM05D002011 ORTHO05D001948 2.1e-06 56.6 165 29.1
MBI14_g15651_MAGBIO Magnolia biondii HOM05D002011 ORTHO05D001948 2.8e-06 56.2 139 36.7
PSO063G4963 Papaver somniferum HOM05D002011 ORTHO05D001948 2.8e-06 56.2 150 32.0
Sed0015470 Sechium edule HOM05D002011 ORTHO05D001948 2.8e-06 56.2 133 34.6
Lj5C77G14 Lonicera japonica HOM05D002011 ORTHO05D001948 3.6e-06 55.8 146 35.6
Sabra17G0045900 Salix brachista HOM05D002011 ORTHO05D001948 3.6e-06 55.8 169 34.3
TPR.G3107 Trifolium pratense HOM05D002011 ORTHO05D001948 3.6e-06 55.8 134 32.8
CARHR239930 Cardamine hirsuta HOM05D002011 ORTHO05D001948 4.7e-06 55.5 140 34.3
Thhalv10000364m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 4.7e-06 55.5 149 31.5
Sabra17G0040900 Salix brachista HOM05D002011 ORTHO05D001948 4.7e-06 55.5 84 44.0
Aa31LG7G400 Aethionema arabicum HOM05D002011 ORTHO05D001948 6.2e-06 55.1 66 53.0
CANSAT56G3958 Cannabis sativa HOM05D002011 ORTHO05D001948 6.2e-06 55.1 141 30.5
Cfa001910 Carpinus fangiana HOM05D002011 ORTHO05D001948 6.2e-06 55.1 132 35.6
THA.LOC104803849 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 6.2e-06 55.1 139 32.4
AL7G19860 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 8.1e-06 54.7 144 34.0
Ca_25896_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 8.1e-06 54.7 156 29.5
SGA_v2.0_scaffold26G11326 Striga asiatica HOM05D002011 ORTHO05D001948 8.1e-06 54.7 128 32.0


User provided reference genes

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