Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 2.6e-52 208.4 99 100.0
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 4.3e-23 111.3 59 79.7
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 5.6e-23 110.9 56 83.9
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.2e-22 109.8 56 87.5
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 6.2e-22 107.5 56 87.5
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 8.0e-22 107.1 56 82.1
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 8.0e-22 107.1 56 82.1
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 8.0e-22 107.1 56 85.7
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 8.0e-22 107.1 56 87.5
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 1.1e-21 106.7 56 87.5
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.4e-21 106.3 60 76.7
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.4e-21 106.3 56 83.9
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.8e-21 105.9 56 85.7
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 2.3e-21 105.5 56 85.7
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.1e-21 105.1 56 85.7
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 4.0e-21 104.8 58 81.0
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 5.2e-21 104.4 56 83.9
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 8.9e-21 103.6 56 82.1
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 8.9e-21 103.6 56 83.9
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.2e-20 103.2 56 80.4
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.5e-20 102.8 56 82.1
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 2.6e-20 102.1 56 83.9
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 2.6e-20 102.1 58 84.5
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 2.6e-20 102.1 56 80.4
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 2.6e-20 102.1 56 80.4
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 2.6e-20 102.1 56 82.1
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.4e-20 101.7 56 80.4
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.4e-20 101.3 56 82.1
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 4.4e-20 101.3 56 83.9
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 4.4e-20 101.3 56 80.4
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 4.4e-20 101.3 56 82.1
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 5.8e-20 100.9 56 80.4
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 5.8e-20 100.9 56 82.1
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.8e-20 100.9 56 82.1
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 7.5e-20 100.5 58 77.6
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 7.5e-20 100.5 58 77.6
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.5e-20 100.5 54 83.3
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.5e-20 100.5 56 82.1
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.5e-20 100.5 56 82.1
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 7.5e-20 100.5 56 82.1
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 7.5e-20 100.5 56 83.9
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 7.5e-20 100.5 56 80.4
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 9.8e-20 100.1 54 83.3
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.3e-19 99.8 56 80.4
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.3e-19 99.8 56 80.4
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.3e-19 99.8 57 84.2
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 1.3e-19 99.8 57 82.5
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.3e-19 99.8 57 82.5
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.3e-19 99.8 57 82.5
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.3e-19 99.8 57 82.5
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.3e-19 99.8 57 82.5
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.7e-19 99.4 56 80.4
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 1.7e-19 99.4 56 82.1
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 1.7e-19 99.4 56 76.8
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.7e-19 99.4 56 83.9
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 2.2e-19 99.0 56 80.4
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 2.9e-19 98.6 57 84.2
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.9e-19 98.6 56 78.6
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 3.7e-19 98.2 56 80.4
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 4.9e-19 97.8 56 78.6
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 4.9e-19 97.8 56 78.6
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 4.9e-19 97.8 56 82.1
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 4.9e-19 97.8 54 85.2
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 4.9e-19 97.8 56 76.8
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 6.4e-19 97.4 56 82.1
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 6.4e-19 97.4 56 82.1
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 6.4e-19 97.4 80 58.8
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 6.4e-19 97.4 56 78.6
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 6.4e-19 97.4 56 78.6
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 6.4e-19 97.4 54 77.8
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 8.3e-19 97.1 56 82.1
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 8.3e-19 97.1 54 79.6
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 8.3e-19 97.1 56 82.1
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 8.3e-19 97.1 57 82.5
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-18 96.7 57 80.7
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-18 96.7 57 80.7
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.1e-18 96.7 57 80.7
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 1.1e-18 96.7 56 80.4
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.4e-18 96.3 57 75.4
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 1.9e-18 95.9 64 67.2
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.9e-18 95.9 58 75.9
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.9e-18 95.9 56 75.0
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 2.4e-18 95.5 56 76.8
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.4e-18 95.5 57 78.9
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.4e-18 95.5 57 78.9
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 2.4e-18 95.5 56 80.4
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 2.4e-18 95.5 56 75.0
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 2.4e-18 95.5 56 75.0
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 3.2e-18 95.1 56 80.4
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 3.2e-18 95.1 57 78.9
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 3.2e-18 95.1 58 75.9
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 3.2e-18 95.1 58 75.9
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 3.2e-18 95.1 56 76.8
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 4.1e-18 94.7 57 77.2
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 4.1e-18 94.7 57 77.2
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 5.4e-18 94.4 54 79.6
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 5.4e-18 94.4 56 78.6
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 7.0e-18 94.0 56 80.4
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.0e-18 94.0 50 84.0
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 7.0e-18 94.0 54 75.9
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 9.2e-18 93.6 54 77.8
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 1.2e-17 93.2 56 73.2
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.6e-17 92.8 54 77.8
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.6e-17 92.8 57 75.4
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 3.5e-17 91.7 52 76.9
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.5e-17 91.7 56 76.8
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.5e-17 91.7 56 76.8
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 3.5e-17 91.7 56 73.2
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 4.6e-17 91.3 56 73.2
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 7.8e-17 90.5 56 76.8
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 1.3e-16 89.7 56 73.2
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 1.3e-16 89.7 56 73.2
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 1.3e-16 89.7 56 73.2
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 1.3e-16 89.7 56 73.2
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.7e-16 89.4 70 60.0
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 3.0e-16 88.6 56 69.6
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 3.0e-16 88.6 56 73.2
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 3.9e-16 88.2 56 69.6
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 3.9e-16 88.2 56 71.4
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 3.9e-16 88.2 56 71.4
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.9e-16 88.2 56 71.4
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.9e-16 88.2 56 73.2
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 5.0e-16 87.8 56 71.4
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 5.0e-16 87.8 50 78.0
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 5.0e-16 87.8 56 75.0
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 6.6e-16 87.4 58 60.3
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 8.6e-16 87.0 57 73.7
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.1e-15 86.7 58 69.0
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.1e-15 86.7 46 80.4
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.1e-15 86.7 56 73.2
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 1.5e-15 86.3 56 66.1
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.9e-15 85.9 47 78.7
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.5e-15 85.5 54 72.2
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 3.3e-15 85.1 56 62.5
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.3e-15 85.1 56 71.4
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.3e-15 84.0 71 59.2
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 1.2e-14 83.2 46 76.1
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 1.6e-14 82.8 74 54.1
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.6e-14 82.8 49 71.4
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 2.1e-14 82.4 85 51.8
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.1e-14 82.4 56 67.9
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.8e-14 82.0 57 68.4
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 6.2e-14 80.9 56 64.3
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.1e-14 80.5 57 66.7
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 8.1e-14 80.5 46 76.1
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.1e-13 80.1 46 78.3
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.1e-13 80.1 54 66.7
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 2.3e-13 79.0 47 74.5
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 4.0e-13 78.2 43 81.4
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 4.0e-13 78.2 43 81.4
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 4.0e-13 78.2 43 81.4
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 4.0e-13 78.2 43 81.4
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 4.0e-13 78.2 43 81.4
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 4.0e-13 78.2 43 81.4
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 4.0e-13 78.2 46 73.9
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 5.2e-13 77.8 46 76.1
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 5.2e-13 77.8 46 76.1
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 5.2e-13 77.8 46 76.1
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 5.2e-13 77.8 46 76.1
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 5.2e-13 77.8 46 76.1
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.2e-13 77.8 40 85.0
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 5.2e-13 77.8 46 76.1
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 6.8e-13 77.4 46 76.1
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 6.8e-13 77.4 46 76.1
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 8.9e-13 77.0 46 71.7
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.3e-11 73.2 50 66.0
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 1.3e-11 73.2 54 57.4
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 1.3e-11 73.2 47 68.1
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 1.3e-11 73.2 47 68.1
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 1.3e-11 73.2 41 80.5
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 4.9e-11 71.2 45 77.8
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 6.4e-11 70.9 58 62.1
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.9e-10 69.3 57 59.6
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 3.2e-10 68.6 36 83.3
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.1e-10 68.2 54 57.4
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.1e-09 65.9 50 54.0
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.1e-09 65.9 50 54.0
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 3.9e-08 61.6 49 55.1
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 6.6e-08 60.8 51 56.9
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.1e-07 60.1 40 67.5
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 8.1e-06 53.9 45 53.3


User provided reference genes

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