Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19699 Selenicereus undatus HOM05D004851 ORTHO05D006091 1.3e-255 885.9 465 100.0
EL10Ac5g10580 Beta vulgaris HOM05D004851 ORTHO05D006091 2.1e-141 506.5 524 58.0
Sc17g0001530 Simmondsia chinensis HOM05D004851 ORTHO05D006091 2.2e-138 496.5 510 57.8
Manes.08G159500 Manihot esculenta HOM05D004851 ORTHO05D006091 6.0e-136 488.4 518 57.5
AUR62008058 Chenopodium quinoa HOM05D004851 ORTHO05D006091 1.3e-135 487.3 523 57.2
CSS0035891 Camellia sinensis var. sinensis HOM05D004851 ORTHO05D006091 6.7e-135 485.0 518 55.6
CiPaw.06G036900 Carya illinoinensis HOM05D004851 ORTHO05D006091 6.7e-135 485.0 511 57.1
Dinv29371 Davidia involucrata HOM05D004851 ORTHO05D006091 1.1e-134 484.2 463 60.0
TAR628G1149 Trochodendron aralioides HOM05D004851 ORTHO05D006091 4.3e-134 482.3 497 57.7
CsaV3_2G035950 Cucumis sativus L. HOM05D004851 ORTHO05D006091 1.8e-132 476.9 448 60.5
Hma1.2p1_2196F.1_g316860 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.8e-132 476.9 446 61.4
Actinidia08788 Actinidia chinensis HOM05D004851 ORTHO05D006091 3.1e-132 476.1 446 60.3
Nitab4.5_0005243g0030 Nicotiana tabacum HOM05D004851 ORTHO05D006091 9.0e-132 474.6 474 57.8
Prupe.2G329900 Prunus persica HOM05D004851 ORTHO05D006091 9.0e-132 474.6 518 56.0
Lj3A883T54 Lonicera japonica HOM05D004851 ORTHO05D006091 1.2e-131 474.2 517 55.3
TWI60G1536 Tripterygium wilfordii HOM05D004851 ORTHO05D006091 4.5e-131 472.2 513 55.4
Sopen11g004490 Solanum pennellii HOM05D004851 ORTHO05D006091 3.8e-130 469.2 506 54.9
MD06G1015700 Malus domestica HOM05D004851 ORTHO05D006091 4.9e-130 468.8 446 60.3
Cfa016106 Carpinus fangiana HOM05D004851 ORTHO05D006091 1.1e-129 467.6 512 55.3
Sed0012488 Sechium edule HOM05D004851 ORTHO05D006091 1.1e-129 467.6 448 59.6
Rhsim03G0240200 Rhododendron simsii HOM05D004851 ORTHO05D006091 1.4e-129 467.2 449 58.4
PGR031G1011 Punica granatum HOM05D004851 ORTHO05D006091 1.9e-129 466.8 520 53.7
Solyc11g008710.2 Solanum lycopersicum HOM05D004851 ORTHO05D006091 3.2e-129 466.1 506 54.7
MELO3C024747.2 Cucumis melo HOM05D004851 ORTHO05D006091 4.2e-129 465.7 448 59.4
PGSC0003DMG402016246 Solanum tuberosum HOM05D004851 ORTHO05D006091 4.2e-129 465.7 481 56.5
MD14G1141700 Malus domestica HOM05D004851 ORTHO05D006091 2.7e-128 463.0 450 59.1
GSVIVG01020716001 Vitis vinifera HOM05D004851 ORTHO05D006091 6.0e-128 461.8 413 62.2
Duzib106G1281 Durio zibethinus HOM05D004851 ORTHO05D006091 1.3e-127 460.7 489 55.2
Duzib128G1329 Durio zibethinus HOM05D004851 ORTHO05D006091 1.3e-127 460.7 446 59.2
Ciclev10031158m.g Citrus clementina HOM05D004851 ORTHO05D006091 6.7e-127 458.4 453 58.3
Eucgr.A00913 Eucalyptus grandis HOM05D004851 ORTHO05D006091 1.9e-126 456.8 460 57.4
CAN.G691.8 Capsicum annuum HOM05D004851 ORTHO05D006091 5.7e-126 455.3 412 60.7
Peaxi162Scf00254g00512 Petunia axillaris HOM05D004851 ORTHO05D006091 3.7e-125 452.6 475 55.4
Cc09_g04170 Coffea canephora HOM05D004851 ORTHO05D006091 1.8e-124 450.3 413 61.5
Nn4g24557 Nelumbo nucifera HOM05D004851 ORTHO05D006091 3.1e-124 449.5 453 57.0
LjContig00389g0015553 Lotus japonicus HOM05D004851 ORTHO05D006091 2.6e-123 446.4 471 56.7
RcHm_v2.0_Chr1g0384661 Rosa chinensis HOM05D004851 ORTHO05D006091 5.9e-123 445.3 447 57.3
Lj3g0009966 Lotus japonicus HOM05D004851 ORTHO05D006091 7.6e-123 444.9 454 57.3
MBI07_g19429_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 1.3e-122 444.1 450 57.3
MBI10_g03402_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 2.2e-122 443.4 451 57.4
Gohir.D13G162900 Gossypium hirsutum HOM05D004851 ORTHO05D006091 1.9e-121 440.3 485 56.1
COL.COLO4_12970 Corchorus olitorius HOM05D004851 ORTHO05D006091 5.5e-121 438.7 474 54.0
Thecc.05G226800 Theobroma cacao HOM05D004851 ORTHO05D006091 5.5e-121 438.7 482 55.4
Potri.013G076200 Populus trichocarpa HOM05D004851 ORTHO05D006091 7.2e-121 438.3 528 51.7
Atru.chr11.646 Acer truncatum HOM05D004851 ORTHO05D006091 2.7e-120 436.4 471 55.6
Ca_17637_v3 Cicer arietinum L. HOM05D004851 ORTHO05D006091 6.1e-120 435.3 456 55.3
AUR62028634 Chenopodium quinoa HOM05D004851 ORTHO05D006091 1.0e-119 434.5 524 52.5
FAN10G2942 Fragaria x ananassa HOM05D004851 ORTHO05D006091 1.8e-119 433.7 446 57.0
FAN03G1643 Fragaria x ananassa HOM05D004851 ORTHO05D006091 8.7e-119 431.4 446 56.5
arahy.Tifrunner.gnm1.ann1.NF9HU2 Arachis hypogaea HOM05D004851 ORTHO05D006091 3.3e-118 429.5 461 55.3
arahy.Tifrunner.gnm1.ann1.VYGS4N Arachis hypogaea HOM05D004851 ORTHO05D006091 3.3e-118 429.5 461 55.3
Sabra13G0065400 Salix brachista HOM05D004851 ORTHO05D006091 3.3e-118 429.5 530 50.6
Gohir.A13G158200 Gossypium hirsutum HOM05D004851 ORTHO05D006091 5.7e-118 428.7 485 55.5
FAN01G0391 Fragaria x ananassa HOM05D004851 ORTHO05D006091 7.4e-118 428.3 446 56.7
Psat7g046360 Pisum sativum HOM05D004851 ORTHO05D006091 7.4e-118 428.3 454 55.5
Lsat_1_v5_gn_3_23200 Lactuca sativa HOM05D004851 ORTHO05D006091 1.6e-117 427.2 528 50.6
FvH4_7g34290 Fragaria vesca HOM05D004851 ORTHO05D006091 2.8e-117 426.4 446 56.5
Nitab4.5_0001003g0170 Nicotiana tabacum HOM05D004851 ORTHO05D006091 8.2e-117 424.9 450 55.8
CANSAT01G3202 Cannabis sativa HOM05D004851 ORTHO05D006091 2.4e-116 423.3 514 51.2
Lalb_Chr01g0022101 Lupinus albus HOM05D004851 ORTHO05D006091 9.0e-116 421.4 451 55.7
Phvul.009G105500 Phaseolus vulgaris HOM05D004851 ORTHO05D006091 1.5e-115 420.6 455 56.0
arahy.Tifrunner.gnm1.ann1.UCI1EL Arachis hypogaea HOM05D004851 ORTHO05D006091 3.4e-115 419.5 466 53.6
ATR0787G085 Amborella trichopoda HOM05D004851 ORTHO05D006091 4.5e-115 419.1 452 53.3
TPR.G37402 Trifolium pratense HOM05D004851 ORTHO05D006091 4.5e-115 419.1 455 53.8
MSTRG.27417 Avicennia marina HOM05D004851 ORTHO05D006091 2.2e-114 416.8 451 54.3
VMungo0540G0464 Vigna mungo HOM05D004851 ORTHO05D006091 3.8e-114 416.0 477 54.3
ECA246G2460 Erigeron canadensis HOM05D004851 ORTHO05D006091 3.2e-113 412.9 448 53.6
Cpa.g.sc34.168 Carica papaya HOM05D004851 ORTHO05D006091 5.5e-113 412.1 405 58.8
HPP92_005346 Vanilla planifolia HOM05D004851 ORTHO05D006091 2.1e-112 410.2 463 50.1
Medtr8g093680 Medicago truncatula HOM05D004851 ORTHO05D006091 3.6e-112 409.5 456 53.3
DCAR_008779 Daucus carota HOM05D004851 ORTHO05D006091 3.9e-111 406.0 420 56.0
vmacro07474 Vaccinium macrocarpon HOM05D004851 ORTHO05D006091 3.3e-110 402.9 620 43.1
Glyma.04G079800 Glycine max HOM05D004851 ORTHO05D006091 1.3e-109 401.0 452 52.4
arahy.Tifrunner.gnm1.ann1.BXG275 Arachis hypogaea HOM05D004851 ORTHO05D006091 4.8e-109 399.1 425 54.4
Gorai.013G185100 Gossypium raimondii HOM05D004851 ORTHO05D006091 4.8e-109 399.1 463 54.0
PSO170G2140 Papaver somniferum HOM05D004851 ORTHO05D006091 6.3e-109 398.7 447 51.7
C02p37840 Brassica napus HOM05D004851 ORTHO05D006091 8.2e-109 398.3 456 51.8
BolC2t09800H Brassica oleracea HOM05D004851 ORTHO05D006091 8.2e-109 398.3 456 51.8
PSO017G3120 Papaver somniferum HOM05D004851 ORTHO05D006091 3.1e-108 396.4 447 51.5
BcaC03g16030 Brassica carinata HOM05D004851 ORTHO05D006091 4.1e-108 396.0 456 51.5
CARHR056280 Cardamine hirsuta HOM05D004851 ORTHO05D006091 4.1e-108 396.0 512 48.2
HanXRQChr08g0228141 Helianthus annuus HOM05D004851 ORTHO05D006091 5.3e-108 395.6 463 52.5
Thhalv10002490m.g Eutrema salsugineum HOM05D004851 ORTHO05D006091 9.1e-108 394.8 456 51.1
BcaB05g23595 Brassica carinata HOM05D004851 ORTHO05D006091 2.6e-107 393.3 512 48.2
Sp5g19120 Schrenkiella parvula HOM05D004851 ORTHO05D006091 7.7e-107 391.7 457 50.5
A02p23990 Brassica napus HOM05D004851 ORTHO05D006091 2.5e-105 386.7 514 47.9
BraA02t07394Z Brassica rapa HOM05D004851 ORTHO05D006091 3.2e-105 386.3 456 50.9
SGA_v2.0_scaffold75G25015 Striga asiatica HOM05D004851 ORTHO05D006091 3.2e-105 386.3 536 46.1
THA.LOC104823793 Tarenaya hassleriana HOM05D004851 ORTHO05D006091 7.9e-104 381.7 457 50.1
AL2G19340 Arabidopsis lyrata HOM05D004851 ORTHO05D006091 1.4e-103 380.9 458 50.2
AT1G64880 Arabidopsis thaliana HOM05D004851 ORTHO05D006091 1.4e-103 380.9 456 50.2
Carub.0002s0996 Capsella rubella HOM05D004851 ORTHO05D006091 1.4e-103 380.9 456 49.8
Aqoxy2G03682 Aquilegia oxysepala HOM05D004851 ORTHO05D006091 1.8e-103 380.6 520 46.5
ClCG02G007790 Citrullus lanatus HOM05D004851 ORTHO05D006091 3.0e-103 379.8 386 57.0
Oeu010173.1 Olea europaea HOM05D004851 ORTHO05D006091 8.8e-103 378.3 470 48.9
Glyma.06G081400 Glycine max HOM05D004851 ORTHO05D006091 1.5e-102 377.5 450 51.1
SalBow1G5096 Salvia bowleyana HOM05D004851 ORTHO05D006091 1.7e-101 374.0 492 46.3
CDE06G0392 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 7.7e-99 365.2 442 48.2
Os02g0102400 Oryza sativa ssp. japonica HOM05D004851 ORTHO05D006091 1.7e-98 364.0 414 49.5
CDE02G1790 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 2.1e-96 357.1 413 48.9
Haze_00351 Corylus avellana HOM05D004851 ORTHO05D006091 6.3e-93 345.5 405 52.6
PSO764G0174 Papaver somniferum HOM05D004851 ORTHO05D006091 2.0e-91 340.5 512 44.3
ECA246G3904 Erigeron canadensis HOM05D004851 ORTHO05D006091 1.3e-90 337.8 451 46.3
Aa31LG2G2120 Aethionema arabicum HOM05D004851 ORTHO05D006091 7.2e-89 332.0 537 42.6
MD07G1311200 Malus domestica HOM05D004851 ORTHO05D006091 4.0e-87 326.2 470 46.8
Zm00001eb229290 Zea mays HOM05D004851 ORTHO05D006091 2.0e-83 313.9 468 42.7
Hma1.2p1_3283F.1_g334850 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.2e-80 304.7 303 58.7
unitig_736.g22500 Utricularia gibba HOM05D004851 ORTHO05D006091 5.4e-76 289.3 430 45.1
Hma1.2p1_2196F.1_g316850 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.3e-74 284.6 275 60.0
Ah.02g111010 Amaranthus hybridus HOM05D004851 ORTHO05D006091 2.0e-70 270.8 470 40.0
SEGI_25717 Sequoiadendron giganteum HOM05D004851 ORTHO05D006091 7.5e-70 268.9 495 38.0
SalBow1G4565 Salvia bowleyana HOM05D004851 ORTHO05D006091 4.0e-55 219.9 246 49.6
Actinidia27036 Actinidia chinensis HOM05D004851 ORTHO05D006091 5.4e-52 209.5 341 41.9
PSO339G3159 Papaver somniferum HOM05D004851 ORTHO05D006091 3.1e-47 193.7 300 41.0
Hma1.2p1_2196F.1_g316870 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.2e-46 191.8 144 70.8
SalBow1G3109 Salvia bowleyana HOM05D004851 ORTHO05D006091 8.9e-39 165.6 134 64.9
Oeu036566.1 Olea europaea HOM05D004851 ORTHO05D006091 6.4e-37 159.5 130 63.8
SalBow1G6742 Salvia bowleyana HOM05D004851 ORTHO05D006091 6.6e-34 149.4 121 66.9
SalBow1G7753 Salvia bowleyana HOM05D004851 ORTHO05D006091 6.6e-34 149.4 121 66.9
Haze_00352 Corylus avellana HOM05D004851 ORTHO05D006091 4.0e-31 140.2 76 90.8
ClCG02G007800 Citrullus lanatus HOM05D004851 ORTHO05D006091 1.7e-29 134.8 76 84.2
SalBow1G8063 Salvia bowleyana HOM05D004851 ORTHO05D006091 5.1e-26 123.2 126 52.4
CBR_g50476 Chara braunii HOM05D004851 ORTHO05D006091 3.3e-25 120.6 166 42.8
HanXRQChr17g0540681 Helianthus annuus HOM05D004851 ORTHO05D006091 1.3e-24 118.6 64 90.6
SalBow1G4067 Salvia bowleyana HOM05D004851 ORTHO05D006091 1.3e-24 118.6 76 78.9
Mapoly0098s0036 Marchantia polymorpha HOM05D004851 ORTHO05D006091 1.1e-23 115.5 236 36.4
AagrBONN_evm.TU.Sc2ySwM_228.993 Anthoceros agrestis HOM05D004851 ORTHO05D006091 1.7e-21 108.2 140 42.1
Pp3c8_16260 Physcomitrium patens HOM05D004851 ORTHO05D006091 3.2e-20 104.0 217 34.1
Actinidia20814 Actinidia chinensis HOM05D004851 ORTHO05D006091 1.8e-18 98.2 182 37.9
SMO361G0506 Selaginella moellendorffii HOM05D004851 ORTHO05D006091 8.1e-16 89.4 127 40.9
MCO11G545 Micromonas commoda HOM05D004851 ORTHO05D006091 2.2e-13 81.3 229 29.7
RcHm_v2.0_Chr3g0482791 Rosa chinensis HOM05D004851 ORTHO05D006091 5.5e-12 76.6 50 74.0
RcHm_v2.0_Chr3g0482781 Rosa chinensis HOM05D004851 ORTHO05D006091 1.0e-10 72.4 41 80.5
MBI09_g43839_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 3.9e-10 70.5 39 76.9
MBI11_g24763_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 6.7e-10 69.7 51 64.7
MBI12_g19411_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D011619 1.9e-09 68.2 39 74.4
MBI09_g39943_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 2.5e-09 67.8 40 75.0
MBI10_g06902_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 2.5e-09 67.8 55 61.8
PRCOL_00000384 Prasinoderma coloniale HOM05D005621 ORTHO05D007248 7.4e-09 66.2 165 27.9
SalBow1G8714 Salvia bowleyana HOM05D004851 ORTHO05D006091 1.3e-08 65.5 89 41.6
AL4G29560 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 3.7e-08 63.9 165 30.9
MBI14_g09475_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D004104 1.1e-07 62.4 115 39.1
RcHm_v2.0_Chr3g0482801 Rosa chinensis HOM05D004851 ORTHO05D006091 1.1e-07 62.4 135 39.3
AT2G33800 Arabidopsis thaliana HOM05D005621 ORTHO05D007248 2.4e-07 61.2 165 30.3
MBI12_g31452_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 3.1e-07 60.8 40 70.0
Thecc.06G184600 Theobroma cacao HOM05D005621 ORTHO05D007248 3.1e-07 60.8 162 29.6
MD10G1292500 Malus domestica HOM05D005621 ORTHO05D007248 4.1e-07 60.5 165 30.3
MD00G1115700 Malus domestica HOM05D005621 ORTHO05D007248 5.3e-07 60.1 165 29.7
Ciclev10016057m.g Citrus clementina HOM05D005621 ORTHO05D007248 6.9e-07 59.7 162 29.0
MBI12_g39868_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 9.0e-07 59.3 60 55.0
Hund02811 Selenicereus undatus HOM05D007797 ORTHO05D009741 9.0e-07 59.3 80 40.0
BcaC02g07768 Brassica carinata HOM05D005621 ORTHO05D007248 1.2e-06 58.9 160 31.9
COL.COLO4_31445 Corchorus olitorius HOM05D005621 ORTHO05D007248 1.2e-06 58.9 162 28.4
Gorai.009G168600 Gossypium raimondii HOM05D005621 ORTHO05D007248 1.2e-06 58.9 162 27.8
Medtr4g088615 Medicago truncatula HOM05D005621 ORTHO05D007248 1.2e-06 58.9 180 29.4
Pp3c7_18380 Physcomitrium patens HOM05D005621 ORTHO05D007248 1.2e-06 58.9 171 28.1
CiPaw.09G061400 Carya illinoinensis HOM05D005621 ORTHO05D007248 2.0e-06 58.2 167 28.7
Gohir.A06G211100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 2.0e-06 58.2 162 28.4
Gohir.D06G210100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 2.0e-06 58.2 162 28.4
Gorai.010G256400 Gossypium raimondii HOM05D005621 ORTHO05D007248 2.0e-06 58.2 162 28.4
Manes.16G029300 Manihot esculenta HOM05D005621 ORTHO05D007248 2.0e-06 58.2 166 30.1
SGA_v2.0_scaffold109G31092 Striga asiatica HOM05D005621 ORTHO05D007248 2.0e-06 58.2 164 28.7
Pp3c11_10680 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.6e-06 57.8 171 27.5
VMungo0251G0522 Vigna mungo HOM05D005621 ORTHO05D007248 2.6e-06 57.8 175 28.0
Nn1g06478 Nelumbo nucifera HOM05D005621 ORTHO05D007248 3.4e-06 57.4 166 29.5
Phvul.002G229700 Phaseolus vulgaris HOM05D005621 ORTHO05D007248 3.4e-06 57.4 170 29.4
Cc02_g13570 Coffea canephora HOM05D005621 ORTHO05D007248 4.5e-06 57.0 166 28.3
Glyma.07G198500 Glycine max HOM05D005621 ORTHO05D007248 4.5e-06 57.0 166 28.3
MCO06G207 Micromonas commoda HOM05D005621 ORTHO05D007248 4.5e-06 57.0 161 30.4
AagrBONN_evm.TU.Sc2ySwM_344.1949 Anthoceros agrestis HOM05D005621 ORTHO05D007248 5.9e-06 56.6 150 28.7
Glyma.13G177900 Glycine max HOM05D005621 ORTHO05D007248 5.9e-06 56.6 166 28.3
SalBow7G0434 Salvia bowleyana HOM05D005621 ORTHO05D007248 5.9e-06 56.6 166 28.9
SalBow7G3926 Salvia bowleyana HOM05D005621 ORTHO05D007248 5.9e-06 56.6 166 28.9
EL10Ac8g20402 Beta vulgaris HOM05D005621 ORTHO05D007248 7.6e-06 56.2 247 25.9
Mapoly0008s0189 Marchantia polymorpha HOM05D005621 ORTHO05D007248 7.6e-06 56.2 151 27.8
FAN11G2270 Fragaria x ananassa HOM05D005621 ORTHO05D007248 1.0e-05 55.8 160 28.8


User provided reference genes

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